| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,654,752 – 4,654,844 |
| Length | 92 |
| Max. P | 0.541220 |
| Location | 4,654,752 – 4,654,844 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 82.74 |
| Mean single sequence MFE | -27.26 |
| Consensus MFE | -17.00 |
| Energy contribution | -17.62 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.541220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4654752 92 + 23771897 ---------CUGUCGGCAGCCACAUGAGUUACAAUUAAAACUACA---GCACAAAUUGCCAAGUUGGCCAAGUAUGUA----CGCAGUAGUAGCUACUGGCCAGCGGC- ---------..((((((((.....((((((........)))).))---.......)))))..((((((((.(((..((----(......)))..))))))))))))))- ( -28.50) >DroPse_CAF1 32367 97 + 1 GCUGCAUGUCUGCUGGGAGCAACAUGAGUUACAAUUAAAACUACA---GCACAAAUUGCCAACUUGGCCAAGUGCUU---------GUGGUAGCCACUGGCCAGCAGCA (((((.((...((..(..(((((....))).........((((((---((((.....(((.....)))...)))).)---------))))).))..)..))))))))). ( -34.10) >DroSim_CAF1 27664 92 + 1 ---------CUGUCGGCAGCCACAUGAGUUACAAUUAAAACUACA---GCACAAAUUGCCAAGUUGGCCAAGUAUGUA----CGCAGUAGGAGCUACUGGCCAGCGGC- ---------..((((((((.....((((((........)))).))---.......)))))..((((((((.(((.((.----(......)..))))))))))))))))- ( -26.40) >DroEre_CAF1 27290 99 + 1 ---------CUGUCGGCAGCCACAUGAGUUACAAUUAAAACUACUGCUGCACAAAUUGCCAAGUUGGCCAAGUAUGUACAUACGUAGUAGGAGCUACUGGCCAGCGGC- ---------.(((((((((.......((((........)))).)))))).)))....(((..((((((((.((((....))))(((((....))))))))))))))))- ( -33.20) >DroYak_CAF1 31088 92 + 1 ---------CUGUCGGCAGCCACAUGAGUUACAAUUAAAACUACU---GCACAAAUUGCCAAGUUGGCCAAGUAUGUA----CGUAGUAGGAGCUACUGGCCAGCGGC- ---------..((((((((.......((((........))))...---.......)))))..((((((((.((....)----)(((((....))))))))))))))))- ( -26.53) >DroAna_CAF1 27370 81 + 1 ---------CUGUCGGCAGCCACAUGAGUUACAAUUAAAACUACA---GCACAAAUUGCCAACUUGGCCAAC---------------UAGUAGCCACUGACCAGCAAC- ---------..(((((..((.((.((((((........)))).))---.........(((.....)))....---------------..)).))..))))).......- ( -14.80) >consensus _________CUGUCGGCAGCCACAUGAGUUACAAUUAAAACUACA___GCACAAAUUGCCAAGUUGGCCAAGUAUGUA____CG_AGUAGGAGCUACUGGCCAGCGGC_ ...........(((((((((......((((........))))......))......))))..((((((((.(((....................)))))))))))))). (-17.00 = -17.62 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:26 2006