Locus 1591

Sequence ID 3L_DroMel_CAF1
Location 4,653,810 – 4,653,912
Length 102
Max. P 0.500000
window2466

overview

Window 6

Location 4,653,810 – 4,653,912
Length 102
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 79.25
Mean single sequence MFE -35.92
Consensus MFE -18.99
Energy contribution -20.93
Covariance contribution 1.95
Combinations/Pair 1.12
Mean z-score -1.83
Structure conservation index 0.53
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4653810 102 - 23771897
GGCUAUCAGACUUCCGGUGGACAUGAUUCCUCUGGAGGACUCCUCAGCUCCCACCAGGGUAAUGGGCCAGUCGGUUAACAU-CUGGCGUUUUGGCCA-ACAUUA
(((((.....(((((((.(((......))).))))))).....(((...(((....)))...)))(((((..(.....)..-)))))....))))).-...... ( -36.10)
>DroSec_CAF1 26157 99 - 1
GGCUAUCAGACUUCCGGUGGACAUGAUUCCUCUGGAGGGCUCCUCAGC--CCACCAGGGUAAUGG-CCCUUCGGUUAACAU-CUGGCGUUUUGGCCA-ACAUUA
((((((((((...((((.((.(((....((.((((.(((((....)))--)).))))))..))).-.)).))))......)-)))).....))))).-...... ( -37.30)
>DroSim_CAF1 26743 100 - 1
GGCUAUCAGACUUCCGGUGGACAUGAUUCCUCUGGAGGGCUCCUCAGC--CCACCAGGGUAAUGGGCCAGUCGGUUAACAU-CUGGCGUUUUGGCCA-ACAUUA
(((((..((((.(((((.(((......))).)))))(((((....)))--)).(((......)))(((((..(.....)..-)))))))))))))).-...... ( -39.20)
>DroEre_CAF1 26403 99 - 1
GGCUAUCAGACUUCCGGUGGACUUGAUUCCUCUGGUGGGCUCCUCGGG--CCACCAGGGUAAUGGGC-GGUCGGUUAACAU-CUGGCGUUUUGGCCA-ACAUUA
((((((((((...(((((.(.(((.(((.(((((((((.((....)).--))))))))).)))))))-.)))))......)-)))).....))))).-...... ( -35.30)
>DroYak_CAF1 30184 102 - 1
GGCUAUCAGACAUCCGGUGGAUGUGAUUCCACUGGAGAGUUUCUCAGC-CCCGCCAGGGUAAUGGGCAGGUCGGUUAACAU-CUGGCGUUUUGGCCAAACAUUA
(((((..((((.(((((((((......)))))))))..))))......-..(((((((.((((.((....)).))))...)-))))))...)))))........ ( -40.10)
>DroAna_CAF1 26580 90 - 1
GGGUAUCGGGCUUAUGAGUGGCUUUAACACUC-GCAGGAC----------GCUGCAGGGUAUACG-AAAUUCGGUUAACUGCCUGGCC-AAGAGCCA-ACAUUA
((((.(((.((((..(((((.......)))))-((((...----------.)))).))))...))-).))))(((.....)))((((.-....))))-...... ( -27.50)
>consensus
GGCUAUCAGACUUCCGGUGGACAUGAUUCCUCUGGAGGGCUCCUCAGC__CCACCAGGGUAAUGGGCCAGUCGGUUAACAU_CUGGCGUUUUGGCCA_ACAUUA
(((((.....(((((((.(((......))).)))))))...............((((..((((.((....)).)))).....)))).....)))))........ (-18.99 = -20.93 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:25 2006