Locus 1590

Sequence ID 3L_DroMel_CAF1
Location 4,652,016 – 4,652,129
Length 113
Max. P 0.654865
window2465

overview

Window 5

Location 4,652,016 – 4,652,129
Length 113
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 79.63
Mean single sequence MFE -26.34
Consensus MFE -10.34
Energy contribution -11.70
Covariance contribution 1.36
Combinations/Pair 1.25
Mean z-score -2.13
Structure conservation index 0.39
SVM decision value 0.25
SVM RNA-class probability 0.654865
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4652016 113 + 23771897
AUUCAAUGGGAAAUGAGCAAGUUGAGUUUAUAGGUUCAGUCACUCGACUUUUUGAAAU-----CAUUCACUCGAAGAAAAGUAAAAAGUAAGGUAAAAUUUGCCCUAUUCCUGUGAAU
(((((.((((((..(.((((((((((........)))....(((..((((((((....-----..(((....)))......))))))))..)))..))))))).)..))))))))))) ( -23.90)
>DroSec_CAF1 24439 103 + 1
AUUCAAUGGGGAAUGAGCAAGUUGGGUUUAUAGGUUCAGUCACUCGACUUUUUGAACU-----CAUUCACUCGAAGAAAACUU----------UCAAAUUUGCCCUAUUCCUGUGAAU
(((((...(((((((.(((((((((((..((..((((((((....)))....))))).-----.))..))))((((.....))----------)).)))))))..))))))).))))) ( -28.70)
>DroSim_CAF1 25047 103 + 1
AUUCAAUGGGGAAUGAGCAAGUUGAGUUUAUAGGUUCAGUCACUCGACUUUUUGAACU-----CAUUCACUCGGAGAAAACUU----------UCAAAUUUGCCCUAUUCCUGUGAAU
(((((...(((((((.(((((((((((..((..((((((((....)))....))))).-----.))..)))).((((....))----------)).)))))))..))))))).))))) ( -29.70)
>DroEre_CAF1 24695 108 + 1
AUUCAAUGGGAAAUGAGCAAGCUGAGUUUAUAGGUGCAGUCACUCGACUUUUUGCACUUUUUGCAUUCACUUGCAGAAAAGUU----------UUAAAUUUGCCUUAUUCCCGUGGUU
.....(((((((.((((...((.(((((((...((((((((....)))....)))))((((((((......))))))))....----------.)))))))))))))))))))).... ( -29.60)
>DroYak_CAF1 28409 92 + 1
AUUGAAUGGGAAAUGAGCAAGUCGAAUUUAUAGAUUCAGUAACACGACUCUUUGCGCU-----CAUUCACUAGCAGAAAUGUU----------UUAAGUU-----------CGUGAAU
...((((((..(((((((.....(((((....))))).((((.........)))))))-----))))..))((((....))))----------....)))-----------)...... ( -19.80)
>consensus
AUUCAAUGGGAAAUGAGCAAGUUGAGUUUAUAGGUUCAGUCACUCGACUUUUUGAACU_____CAUUCACUCGAAGAAAAGUU__________UCAAAUUUGCCCUAUUCCUGUGAAU
.....(((((((....(((((((((((.....(((((((((....)))....))))))......)))).(.....)....................)))))))....))))))).... (-10.34 = -11.70 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:24 2006