| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 499,024 – 499,114 |
| Length | 90 |
| Max. P | 0.925203 |
| Location | 499,024 – 499,114 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 84.35 |
| Mean single sequence MFE | -30.70 |
| Consensus MFE | -25.06 |
| Energy contribution | -25.00 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.925203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 499024 90 - 23771897 UCCCACUCUCGAGUUGC-AAUUUUGGGUCGGGAAUGCCGUUUUGGCCGUUGUCUUUGGGCCGUUGAGCCUAACGGCAAAUGACGGGAAAUA ((((..((((((.((..-......)).)))))).(((((((..(((((..(((....)))...)).))).)))))))......)))).... ( -32.30) >DroSim_CAF1 80669 90 - 1 UCCCACUCUCGAGAUGC-AGUUUUGGGUCGGGAAUGCCGUUUUGGCCGUUGUCUUUGGGCCGUUGAGCCUAACGGCAAAUGACGGGAAAUA ((((...((((((((..-.))))))))..)))).(.(((((...(((((......(((((......))))))))))....))))).).... ( -31.60) >DroEre_CAF1 82224 76 - 1 UUCCACCCGUAAAAUGC-AAUUUUGGGUCGGGAAUGCCGUUUUGGCCGUU--------------GAGGCUAACGGCAAAUGACGGGAAAUA ((((.((((..(((...-...)))....))))..((((((..(((((...--------------..))))))))))).......))))... ( -26.80) >DroYak_CAF1 83372 91 - 1 UUCCACUCGCGAGAUAUGAAUUUUGGGUCGGGAAUGCCGUUUUGGCCGUUGUCUUUGGGUCGCUGAGGCUAACGGCAAAUGACGGGAAAUA ((((...(.((((((....)))))).)...))))(.(((((...(((((((.(((..(....)..))).)))))))....))))).).... ( -32.10) >consensus UCCCACUCGCGAGAUGC_AAUUUUGGGUCGGGAAUGCCGUUUUGGCCGUUGUCUUUGGGCCGUUGAGCCUAACGGCAAAUGACGGGAAAUA ((((((((..(((((....))))))))).)))).(.(((((...(((((((..((..(....)..))..)))))))....))))).).... (-25.06 = -25.00 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:05 2006