Locus 1586

Sequence ID 3L_DroMel_CAF1
Location 4,646,462 – 4,646,556
Length 94
Max. P 0.956207
window2458

overview

Window 8

Location 4,646,462 – 4,646,556
Length 94
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 85.11
Mean single sequence MFE -28.70
Consensus MFE -25.17
Energy contribution -25.67
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.13
Structure conservation index 0.88
SVM decision value 1.46
SVM RNA-class probability 0.956207
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4646462 94 - 23771897
GUGUGUCGUGUCAGAUAAGCGACCAAAACGCAGCUGCUGUCACGGCACCACCCACAGCACCCA-GUCUACCCAGUCCACCCAUCGUGGCCAACCA-
((((((((((.(((...(((..(......)..))).))).))))))).)))............-.........(.((((.....)))).).....- ( -25.80)
>DroSec_CAF1 18889 86 - 1
GUGUGUCAUGUCAGAUAAGCGGCCAAAACGCGGCUGCUGUCACGGCACCACCCACAGCACCCA----------GUCCAGCCAUCGUGGCCAACCAC
(((.((..((((.((((.((((((.......))))))))))..))))..)).)))........----------.....(((.....)))....... ( -25.30)
>DroSim_CAF1 19471 80 - 1
GUGUGUCGUGUCAGAUAAGCGGCCAAAACGCGGCUGCUGUCACGGCACCACCCACAGCACCCA----------------CCAUCGUGGCCAACCAC
((((((((((.(((...(((.((......)).))).))).))))))).))).........(((----------------(....))))........ ( -29.40)
>DroEre_CAF1 19058 85 - 1
GUGUGUCGUGUCAGAUAAGCGGCCCAAACGCGGCUGCUGUCACGGCACCACCCACUCCACCCAC----------ACCACCCAUUGUGGGCAACCA-
((((((((((.(((...(((.((......)).))).))).))))))).)))........(((((----------(........))))))......- ( -34.30)
>consensus
GUGUGUCGUGUCAGAUAAGCGGCCAAAACGCGGCUGCUGUCACGGCACCACCCACAGCACCCA___________UCCACCCAUCGUGGCCAACCA_
((((((((((.(((...(((.((......)).))).))).))))))).)))((((.............................))))........ (-25.17 = -25.67 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:16 2006