Locus 1585

Sequence ID 3L_DroMel_CAF1
Location 4,640,394 – 4,640,514
Length 120
Max. P 0.585200
window2457

overview

Window 7

Location 4,640,394 – 4,640,514
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.06
Mean single sequence MFE -38.63
Consensus MFE -26.15
Energy contribution -25.72
Covariance contribution -0.44
Combinations/Pair 1.43
Mean z-score -1.88
Structure conservation index 0.68
SVM decision value 0.10
SVM RNA-class probability 0.585200
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4640394 120 + 23771897
CAGUUCCAACUGAGCCCGGUAGCAGUCGUACUUGAUGUACUGAGUGCAGUACAGUGAAUGUGAGAUAAGUUCCUGCAGCAUGUGGGGUGAAAAUUCCCUAUAUCUGAUGUUGAAGCUGAA
(((((.((((.((((......(((.((((((.....)))).)).)))..((((.....))))......))))...(((.((((((((........)))))))))))..)))).))))).. ( -37.20)
>DroVir_CAF1 26019 120 + 1
CAGCUCCAGCUGGGCGCGAUAGCAAUCAUAUUUGAUGUACUGUGUGCAGUAGAGCGAGUGCGAGAUCAGCUCCUGCAGCAUGUGCGGGGAGAACUCUCGGUAGCGAAUGUUGAAGCUGAA
(((((.((((....((((((....))).((((((.(.(((((....))))).).))))))(((((....((((((((.....))).)))))...)))))...)))...)))).))))).. ( -42.80)
>DroGri_CAF1 15764 120 + 1
CAAUUCUAGCUGGGCGCGAUAACAAUCGUAUUUGAUGUACUGUGUGCAGUAGAGCGAAUGCGAGAUCAGCUCCUGCAACAUGUGCGGCGAGAACUCCCUGUAGCGUAUGUUGAAACUGAA
...(((.(((...(((((((.....(((((((((.(.(((((....))))).).))))))))).)))..((((((((.....))))).)))...........))))..))))))...... ( -37.60)
>DroWil_CAF1 14315 120 + 1
CAGUUCCAAUUGAGCGCGAUAGCAAUCAUAUUUGAUGUACUGAGUGCAGUACAACGAGUGUGAUAUAAGCUCCUGUAGCAUGUGUGGCGAGAAUUCUCGAUAGCGUAUAUUGAAGCUAAA
.((((.((((.((((((....)).((((((((((.(((((((....))))))).))))))))))....)))).......((((....((((....))))...))))..)))).))))... ( -39.70)
>DroMoj_CAF1 20218 120 + 1
CAGUUCCAGCUGGGCGCGAUAGCAAUCGUAUUUGAUGUACUGUGUACAGUAGAGCGAAUGUGAUAUGAGCUCCUGCAGCAUAUGCGGUGAGAAUUCUCUGUAGCGUAUGUUGAAACUGAA
(((((.(((..((((((....)).((((((((((.(.(((((....))))).).))))))))))....)))))))((((((((((...(((....)))....)))))))))).))))).. ( -42.50)
>DroAna_CAF1 12458 120 + 1
GAGCUCCAAUUGGGCCCGAUAGCAGUCGUACUUAAUGUACUGCGUGCAAUACAGUGAGUGCGAAAUAAGUUCCUGCAGCAUGUGAGGUGAGAAUUCUCGGUAGCGGAUAUUGAAACUGAA
..(((((......(((..(((((..(((((((((.((((.((....)).)))).))))))))).....((....)).)).)))..)))(((....))))).)))................ ( -32.00)
>consensus
CAGUUCCAACUGGGCGCGAUAGCAAUCGUAUUUGAUGUACUGUGUGCAGUACAGCGAAUGCGAGAUAAGCUCCUGCAGCAUGUGCGGUGAGAAUUCUCGGUAGCGUAUGUUGAAACUGAA
(((((.((((....(((........(((((((((.(.(((((....))))).).)))))))))......((((((((.....))))).)))...........)))...)))).))))).. (-26.15 = -25.72 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:15 2006