| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,635,227 – 4,635,322 |
| Length | 95 |
| Max. P | 0.945650 |
| Location | 4,635,227 – 4,635,322 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 75.57 |
| Mean single sequence MFE | -21.33 |
| Consensus MFE | -16.56 |
| Energy contribution | -16.45 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.78 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.945650 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4635227 95 - 23771897 CAUUGGCACUUAACCCCGAAAAG-----------UUCUGUACAC--CC-----CAGCCACUCAUAAAAUUUCGAUGAGCGGUAAACACGCUGAGUAAUUAACGUUAAAGUGCA .....((((((............-----------..........--..-----..(((.(((((.........))))).)))....(((.(((....))).)))..)))))). ( -19.60) >DroVir_CAF1 13072 93 - 1 CAUUUGCACUUAACCUCAAACCC----GC--------AGCGGGC--C------GAGCCAUUCAUAAAAUUUCGAUGAGCGGUAAACACGCAAAGUAAUUAACGGUAAAGUGCU .....((((((.(((.....(((----(.--------..)))).--.------..(((.(((((.........))))).)))....................))).)))))). ( -22.40) >DroWil_CAF1 8031 85 - 1 CAUUUGCACUUAACCUCAACCAU-----------UU-----------------CAGCCAUUCAUAAAAUUUCGAUGAGCGGUAAACACGCAGAGUAAUUAACGGUAAAGUGCA ....(((((((.(((........-----------..-----------------..(((.(((((.........))))).)))....((.....)).......))).))))))) ( -18.10) >DroMoj_CAF1 13855 102 - 1 CAUUUGCACUUAACCCCAAACCC----ACGAG--AGCCGCCGAC--CC---GGGAGCCAUUCAUAAAAUUUCGAUGAGCGGUAAACACUCAGAGUAAUUAACGGUAAAGUGCU .....((((((.(((........----..(((--.((..(((..--.)---))..))..)))....((((.(..((((.(.....).))))..).))))...))).)))))). ( -23.10) >DroAna_CAF1 7456 100 - 1 CAUUGCCACUUAACCCCGAAAAG-----------UUCUGUACCG--ACGCUGCAAACCACUCAUAAAAUUUCGAUGAGCGGUAAACACGCAGAGUAAUUAACGGUAAAGUGCU .....................((-----------(.((.(((((--((.((((..(((.(((((.........))))).)))......)))).))......))))).)).))) ( -20.70) >DroPer_CAF1 10248 108 - 1 GAUUUGCACUUAACCCAGGAAAAAAAAUAAUGAAACCUGUACGCGACC-----AAACCAUUCAUAAAAUUUCGAUGAGCGGUAAACACGCAGAGUAAUUAACGGUAAAGUGCU .....((((((.(((((((................))))...(((...-----..(((.(((((.........))))).))).....)))............))).)))))). ( -24.09) >consensus CAUUUGCACUUAACCCCAAAAAC___________UUCUGUACAC__CC_____AAGCCAUUCAUAAAAUUUCGAUGAGCGGUAAACACGCAGAGUAAUUAACGGUAAAGUGCU .....((((((.(((........................................(((.(((((.........))))).)))....((.....)).......))).)))))). (-16.56 = -16.45 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:14 2006