Locus 1583

Sequence ID 3L_DroMel_CAF1
Location 4,632,739 – 4,632,839
Length 100
Max. P 0.890855
window2455

overview

Window 5

Location 4,632,739 – 4,632,839
Length 100
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 80.47
Mean single sequence MFE -27.35
Consensus MFE -17.54
Energy contribution -17.40
Covariance contribution -0.14
Combinations/Pair 1.16
Mean z-score -2.32
Structure conservation index 0.64
SVM decision value 0.96
SVM RNA-class probability 0.890855
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4632739 100 - 23771897
AGACAUUUCCGCCACUUUAAUUUUCAAAAGCUUACACUUGAGAUUUUAUUGGCCAAUUCAUUGUUGGCCAUGGCCAGCAC--GGAAAA---------AGGGCGAAAC--AGAA---
.........((((.((((...((((((..........)))))).............(((..(((((((....))))))).--.)))))---------))))))....--....--- ( -24.90)
>DroPse_CAF1 7895 102 - 1
AGACAUUUCCGCCACUUUAAUUUUCAAAAGCUUACACUUGAGAUUUUAUUGGCCAAUUCAUUGUUGGCCAUUGGAAUGAA--GGGGAA---------A-GGCGAAAG--GGAAAAC
.....(((((....((((..(((((.....((((....))))((((((.((((((((.....)))))))).)))))))))--))..))---------)-).(....)--))))).. ( -29.20)
>DroYak_CAF1 6532 110 - 1
AGACAUUUCCGCCACUUUAAUUUUCAAAAGCUUACACUUGAGAUUUUAUUGGCCAAUUCAUUGUUGGCCAUGGCGAGCAAG-GGAAAAAGGGCCAAAAGGGCGAAAC--AGAA---
.........((((.((((...((((((..........))))))......(((((..(((.(((((.((....)).))))).-.)))....)))))))))))))....--....--- ( -31.30)
>DroMoj_CAF1 6413 99 - 1
AGACAUUUCCGCCACUUUAAUUUUCAAAAGCUUACACUUGAGAUUUUAUUGGCCAAUUCAUUGUUGGCUACGAAAA-AAAGGGGCCAAGG------------AAAGCAAUGC----
.(...((((((((.((((..(((((((((.((((....)))).))))..((((((((.....)))))))).)))))-)))).)))...))------------))).).....---- ( -24.60)
>DroAna_CAF1 4885 92 - 1
AGACAUUUCCGCCACUUUAAUUUUCAAAAGCUUACACUUGAGAUUUUAUUGGCCAAUUCAUUGUUGGCCAUGGUCUGAAGG-GGAAAA---------AGUGC--------------
.....(((((....((((........))))......(((.(((((....((((((((.....)))))))).))))).))).-))))).---------.....-------------- ( -24.90)
>DroPer_CAF1 7890 102 - 1
AGACAUUUCCGCCACUUUAAUUUUCAAAAGCUUACACUUGAGAUUUUAUUGGCCAAUUCAUUGUUGGCCAUUGGAAUGAA--GGGGAA---------A-GGCGAAAG--GGAAAAC
.....(((((....((((..(((((.....((((....))))((((((.((((((((.....)))))))).)))))))))--))..))---------)-).(....)--))))).. ( -29.20)
>consensus
AGACAUUUCCGCCACUUUAAUUUUCAAAAGCUUACACUUGAGAUUUUAUUGGCCAAUUCAUUGUUGGCCAUGGCAAGAAA__GGAAAA_________A_GGCGAAAC__AGAA___
.....(((((...........((((((..........))))))......((((((((.....))))))))............)))))............................. (-17.54 = -17.40 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:13 2006