Locus 1582

Sequence ID 3L_DroMel_CAF1
Location 4,630,895 – 4,630,996
Length 101
Max. P 0.717041
window2454

overview

Window 4

Location 4,630,895 – 4,630,996
Length 101
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 73.77
Mean single sequence MFE -33.08
Consensus MFE -16.05
Energy contribution -16.08
Covariance contribution 0.03
Combinations/Pair 1.56
Mean z-score -1.80
Structure conservation index 0.49
SVM decision value 0.39
SVM RNA-class probability 0.717041
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4630895 101 - 23771897
CAAAUCUACUUUCGUCACUUCCAUCGGCUGCCCAUUUUGGAUGUUUUACUAU---GAGUGUUGCUGCUGCU---AUUUUGGUGUUGUUCAUCCUGGGCGGCCAACUC
.........................(((((((((....(((((...(((((.---(((((..((....)))---))))))))).....))))))))))))))..... ( -30.40)
>DroSec_CAF1 3414 101 - 1
CAAAUCUACUUUCGUCACUUCCAACGGCUGCCCAUCUUGGAUGUUUUACUAU---GGGUAUUGCUGCUGCU---GUUCUGGUGUUGUUCAUCCUGGGCGGCCAGCUC
.........................(((((((((....(((((...(((((.---(..((..((....)))---)..)))))).....))))))))))))))..... ( -31.70)
>DroEre_CAF1 3372 101 - 1
CAAAACUACUUUCGUCACUUCCAGCGGCUGCCCAUCUUAGAUGUUUUGCUAU---GGGUGUUGCUGCUGCU---GUUUUGGUGCUGUUCAUCCUGGGCGGCCAGCUC
......................((((((((((((...(((........))).---(((((..((.((.(((---.....))))).)).)))))))))))))).))). ( -31.60)
>DroWil_CAF1 3343 98 - 1
CCCGUCUACUUUCGUCACUUCCAGCGGCUGCCAACUUUCGUGGCCUUGGGAU---GUGAAGAUGCGGUACU---AUUUUGA-G--CCUCAUCCUGGGCAGCCAACUC
...(((((......((((((((((.(((..(........)..))))))))).---)))).((((.(((.(.---.....).-)--)).)))).)))))......... ( -31.50)
>DroMoj_CAF1 3786 104 - 1
CGCGUUUACUUUCGUCACUUCCAGCGGCUGCUCAUCCUCGAGGAUUUGGCAUGAUGAGAGGAGGUGUUGCUGUUGCUCUG---CGCUUCAUCUUGGGCGGCCAGCUC
.(((........))).......(((((((((((((((....))))..........((((.(((((((.((....))...)---)))))).)))))))))))).))). ( -36.20)
>DroAna_CAF1 3233 98 - 1
GGGACCUGCUUUCGUCACUUCCAGCGGCUGCCCAUCUUGGAAGCCUUGUUGU---GAGCAUUAGU---ACU---GUUCUGAUGCUGCUCCUCCUGGGCGGCCAGCUC
.(((..(((....).))..)))((((((((((((....(((.((........---.((((((((.---...---...)))))))))))))...))))))))).))). ( -37.10)
>consensus
CAAAUCUACUUUCGUCACUUCCAGCGGCUGCCCAUCUUGGAUGUUUUGCUAU___GAGUAUUGCUGCUGCU___GUUCUGGUGCUGUUCAUCCUGGGCGGCCAGCUC
.........................(((((((((............((((......))))..................(((......)))...)))))))))..... (-16.05 = -16.08 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:12 2006