Locus 1581

Sequence ID 3L_DroMel_CAF1
Location 4,619,530 – 4,619,625
Length 95
Max. P 0.516626
window2453

overview

Window 3

Location 4,619,530 – 4,619,625
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 82.12
Mean single sequence MFE -30.68
Consensus MFE -21.63
Energy contribution -21.97
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 0.71
SVM decision value -0.03
SVM RNA-class probability 0.516626
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4619530 95 + 23771897
CCGCAGCAUUGUGGUAGCUGGCAAAGUUAAGUGCGUGCUGCGUUUGCGGCAGGCCAAAAUGAACAGCGGCCAGGGGGGUGGGGGUUGGUUGAAAC
((.((.(.((.((((.((((.....(((..(.((.((((((....)))))).)))..)))...)))).)))).)).).)).))............ ( -33.90)
>DroSec_CAF1 196610 90 + 1
CCGCAGCAUUGUGGUAGCUG-CAAAGUUAAGUGCGUGCUGCGUUUGCGGCAGGCCAAAAUGAACAGCGGCCAGAGGAGCGG----UGGGCGGAAC
((((.((.((.((((.((((-....(((..(.((.((((((....)))))).)))..)))...)))).)))).))..))..----...))))... ( -35.20)
>DroSim_CAF1 196586 91 + 1
CCGCAGCAUUGUGGUAGCUGGCAAAGUUAAGUGCGUGCUGCGUUUGCGGCAGGCCGAAAUGAACAGCGGCCAGGGGAGCGG----UGGGCGGAAC
((((.((.((.((((.((((.....(((..(.((.((((((....)))))).)))..)))...)))).)))).))..))..----...))))... ( -36.60)
>DroEre_CAF1 205512 88 + 1
CCGCAGCAUUGUGGUAGCUGGCAAAGUUAAGUGCGUGCUGCGUUUGCGGCAUGCCGAAAUGAACAGCGAGC---GGAGCAG----AGGUUGGGAA
((.((((.((((....(((.((...(((..(.(((((((((....))))))))))..))).....)).)))---...))))----..)))))).. ( -32.60)
>DroYak_CAF1 202358 76 + 1
CCGCAGCAUUGUGGUAGCUGGCAAAGUUAAGUGCGUGAUGCGUUUGCGGCAGGCCAAAAUGAACAGCGGGC---G----------------GGAA
((((.((((..((.(((((.....)))))....))..))))((((..((....)).)))).....))))..---.----------------.... ( -21.90)
>DroAna_CAF1 207832 84 + 1
CCGCAGCAUUGUGGUAGCUGGCAAAGUUAAGUGCGUGCUGCGUUUGCGGCAGGCCAAAAUGAACAUCAGUAGUAGUAGUGG-----------CAG
((((.((((((((((((((.....))))..(.((.((((((....)))))).))).........)))).)))).)).))))-----------... ( -23.90)
>consensus
CCGCAGCAUUGUGGUAGCUGGCAAAGUUAAGUGCGUGCUGCGUUUGCGGCAGGCCAAAAUGAACAGCGGCCAG_GGAGCGG____UGG__GGAAC
((((......))))..((((.....(((..(.((.((((((....)))))).)))..)))...))))............................ (-21.63 = -21.97 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:11 2006