Locus 1580

Sequence ID 3L_DroMel_CAF1
Location 4,614,276 – 4,614,376
Length 100
Max. P 0.779506
window2452

overview

Window 2

Location 4,614,276 – 4,614,376
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 87.40
Mean single sequence MFE -25.46
Consensus MFE -17.90
Energy contribution -19.30
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -2.18
Structure conservation index 0.70
SVM decision value 0.55
SVM RNA-class probability 0.779506
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4614276 100 + 23771897
ACGCAAAAAAGAGUUUAUUUUUGUGCAACUAUUUGGCAGCAGCCAGAAAAUAAAUUUGCGGAAAAUUGCGAAAAACGCACAGCUGCGGAGCGGCGAACAC
............((((.....(((((.....((((((....)))))).......(((((((....)))))))....)))))(((((...))))))))).. ( -27.30)
>DroSec_CAF1 191393 100 + 1
ACUUAAAAAAGAGUUUAUUUUUGUGCAACUAUUUGGCAGCAGCCAUAAAAUAAAUUUGUGGAAAAUUGCGAAAAACGCACAGCUGCGGAGGGGCGAAAAC
((((......))))...(((((((.(.....(((.(((((..(((((((.....))))))).....((((.....))))..))))).)))).))))))). ( -25.40)
>DroSim_CAF1 191404 100 + 1
CCUUAAAAAAGAGUUUAUUUUUGUGCAACUAUUUGGCAGCAGCCAUAAAAUAAAUUUGUGGAAAAUUGCGAAAAACGCACAGCUGCGGAGCGGCGAAAAC
.................(((((((((......((.(((((..(((((((.....))))))).....((((.....))))..))))).)))).))))))). ( -24.10)
>DroEre_CAF1 200347 98 + 1
AUGUAAGGAUGGUUUU--UUAGGUGCAACUAUUUGGCAGUAUCCAUAAAAUAAAUUUGCGGAAAAUGGCGAAAAAUGCACAGCUGCGGAGCGGCGCAAAC
.(((............--....(((((....((((.((...(((.((((.....)))).)))...)).))))...))))).(((((...))))))))... ( -22.60)
>DroYak_CAF1 196849 100 + 1
AUAUAAAAAUGAGUUUAGUUUUGUGCAACUAUUUGGCAGUGUCCAUAAAAUAAAAUUGUGGCAAAUUGCGAAAAAUGCACAGCUGCGGAGCGGCGGCAAC
.....................((((((....(((.(((((..((((((.......))))))...))))).)))..))))))(((((......)))))... ( -27.90)
>consensus
ACGUAAAAAAGAGUUUAUUUUUGUGCAACUAUUUGGCAGCAGCCAUAAAAUAAAUUUGUGGAAAAUUGCGAAAAACGCACAGCUGCGGAGCGGCGAAAAC
.....................(((((.....(((.((((...(((((((.....)))))))....)))).)))...)))))(((((...)))))...... (-17.90 = -19.30 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:10 2006