Locus 158

Sequence ID	3L_DroMel_CAF1
Location	498,609 – 498,702
Length	93
Max. P	0.981349

overview

Window 5

Location	498,609 – 498,702
Length	93
Sequences	5
Columns	94
Reading direction	forward
Mean pairwise identity	77.16
Mean single sequence MFE	-16.38
Consensus MFE	-7.54
Energy contribution	-7.18
Covariance contribution	-0.36
Combinations/Pair	1.17
Mean z-score	-2.48
Structure conservation index	0.46
SVM decision value	1.89
SVM RNA-class probability	0.981349
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 498609 93 + 23771897
AUAAUUCCAAAAGAAGGGUAUUUCUAUCCUCAACUUCUGAGUCUUGUCUUUUGUUUU-AUAUUACUCCAACAUUUUUACGGCAACCUUUCGCCA
((((...(((((((.(((((....)))))(((.....)))......)))))))..))-))...................(((........))). ( -14.40)
>DroSec_CAF1 78907 86 + 1
AAGAUUCCAUUAGAAGGGUAUUC------CCAACU--UGAAUCUUAACUUUUUUUCUAAUAUUACUCAAACAUUUUUACGGCAACCUUUCGCCA
(((((((....((..(((....)------))..))--.)))))))..................................(((........))). ( -15.40)
>DroSim_CAF1 80263 88 + 1
AUGAUUCCAUUAGAAGGGUAUUC------CCAACUUCUGAGUCUUAACUUUUUUUUUAAUAUUACUCCAACAUUUUUACGGCAACCUUUCGCCA
..(((((....((..(((....)------))..))...)))))....................................(((........))). ( -14.00)
>DroEre_CAF1 81819 82 + 1
-AUAUACCAAAAGAAGGGUAUUGCCAGCUCCAACUUCUGGGUCUUAAGUUUU--------AUUGCCCCAACAUUUUUAUGGCAACCUUUCG---
-...........(((((((..(((((............((((..((.....)--------)..))))...........)))))))))))).--- ( -20.70)
>DroYak_CAF1 82965 86 + 1
AUUAUUCCAACAGAAGGGUAUUGUCAGCUCCAACUUCUGAGUCUCAGCUUUU--------AUUGCUCCAACAUUUUUAUGGCAACCUUUCGCCA
............(((((((..(((((((((........))))...(((....--------...)))............)))))))))))).... ( -17.40)
>consensus
AUGAUUCCAAAAGAAGGGUAUUC__A_C_CCAACUUCUGAGUCUUAACUUUU_UU_U_AUAUUACUCCAACAUUUUUACGGCAACCUUUCGCCA
............(((((((...................((((.....................))))...(........)...))))))).... ( -7.54 =  -7.18 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:04 2006