Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 498,609 – 498,702 |
Length | 93 |
Max. P | 0.981349 |
Location | 498,609 – 498,702 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 77.16 |
Mean single sequence MFE | -16.38 |
Consensus MFE | -7.54 |
Energy contribution | -7.18 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.17 |
Mean z-score | -2.48 |
Structure conservation index | 0.46 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981349 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 498609 93 + 23771897 AUAAUUCCAAAAGAAGGGUAUUUCUAUCCUCAACUUCUGAGUCUUGUCUUUUGUUUU-AUAUUACUCCAACAUUUUUACGGCAACCUUUCGCCA ((((...(((((((.(((((....)))))(((.....)))......)))))))..))-))...................(((........))). ( -14.40) >DroSec_CAF1 78907 86 + 1 AAGAUUCCAUUAGAAGGGUAUUC------CCAACU--UGAAUCUUAACUUUUUUUCUAAUAUUACUCAAACAUUUUUACGGCAACCUUUCGCCA (((((((....((..(((....)------))..))--.)))))))..................................(((........))). ( -15.40) >DroSim_CAF1 80263 88 + 1 AUGAUUCCAUUAGAAGGGUAUUC------CCAACUUCUGAGUCUUAACUUUUUUUUUAAUAUUACUCCAACAUUUUUACGGCAACCUUUCGCCA ..(((((....((..(((....)------))..))...)))))....................................(((........))). ( -14.00) >DroEre_CAF1 81819 82 + 1 -AUAUACCAAAAGAAGGGUAUUGCCAGCUCCAACUUCUGGGUCUUAAGUUUU--------AUUGCCCCAACAUUUUUAUGGCAACCUUUCG--- -...........(((((((..(((((............((((..((.....)--------)..))))...........)))))))))))).--- ( -20.70) >DroYak_CAF1 82965 86 + 1 AUUAUUCCAACAGAAGGGUAUUGUCAGCUCCAACUUCUGAGUCUCAGCUUUU--------AUUGCUCCAACAUUUUUAUGGCAACCUUUCGCCA ............(((((((..(((((((((........))))...(((....--------...)))............)))))))))))).... ( -17.40) >consensus AUGAUUCCAAAAGAAGGGUAUUC__A_C_CCAACUUCUGAGUCUUAACUUUU_UU_U_AUAUUACUCCAACAUUUUUACGGCAACCUUUCGCCA ............(((((((...................((((.....................))))...(........)...))))))).... ( -7.54 = -7.18 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:04 2006