Locus 1575

Sequence ID 3L_DroMel_CAF1
Location 4,594,875 – 4,594,969
Length 94
Max. P 0.766748
window2441

overview

Window 1

Location 4,594,875 – 4,594,969
Length 94
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 80.92
Mean single sequence MFE -22.50
Consensus MFE -16.42
Energy contribution -16.84
Covariance contribution 0.42
Combinations/Pair 1.19
Mean z-score -1.64
Structure conservation index 0.73
SVM decision value 0.52
SVM RNA-class probability 0.766748
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4594875 94 - 23771897
CCGAUCUAAAAUAAACAUGAGAAGUGUGUGCA-CGACCCUCGCUGGUUCAACGCAUUUUAUUUUUUCUGUUUUGUGGGGCGUACACUUCUCGAAA
.................((((((((((((((.-.((.((.....)).))..((((.................))))..))))))))))))))... ( -24.83)
>DroPse_CAF1 196585 75 - 1
UCGAUCUAAAAUAAACACGAGAGGAGCGCAGAGAGACCC-------UUCAAAA----UU---------GUUAUGUGGGGCGUACACUCUUCAAAG
....................((((((.(......(.(((-------(.((...----..---------....)).)))))...).)))))).... ( -12.30)
>DroSec_CAF1 171555 94 - 1
CCGAUCUAAAAUAAACAUGAGAAGUGUGUGCA-CGACCCUCGCUGCUUCAGCGCUUUUUAUUUUUUCUUUUUUGUGGGGCGUACACUUCUCGAAA
.................((((((((((....(-((.(((((((((...)))))......................)))))))))))))))))... ( -24.74)
>DroSim_CAF1 171979 94 - 1
CCGAUCUAAAAUAAACAUGAGAAGUGUGUGCA-CGACCCUCGCUGCUUCAGCGCUUUUUAUUUUUUCUUUUUUGUGGGGCGUACACUUCUCGAAA
.................((((((((((....(-((.(((((((((...)))))......................)))))))))))))))))... ( -24.74)
>DroEre_CAF1 180153 85 - 1
CCGAUCUAAAAUAAACACGAGAAGUGUGUGCA-CGACCCUCGCUGCUUGAACGCUUUUUAUU---------UUGUGGGGCGUACACUUCUCAAAA
..................(((((((((....(-((.(((.(((....((((.....))))..---------..)))))))))))))))))).... ( -24.20)
>DroYak_CAF1 177195 85 - 1
CCGAUCUAAAAUAAACACGAGAAGUGUGUGCA-CGACCCUCGCUGCUUCAACGCUUUUUAUU---------UUGUGGGGCGUACACUUCUCAAAA
..................(((((((((..(((-((.....)).)))....(((((((.....---------....)))))))))))))))).... ( -24.20)
>consensus
CCGAUCUAAAAUAAACACGAGAAGUGUGUGCA_CGACCCUCGCUGCUUCAACGCUUUUUAUU_______UUUUGUGGGGCGUACACUUCUCAAAA
..................(((((((((((((.....(((....................................)))))))))))))))).... (-16.42 = -16.84 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:00 2006