Locus 1574

Sequence ID 3L_DroMel_CAF1
Location 4,590,531 – 4,590,621
Length 90
Max. P 0.939547
window2440

overview

Window 0

Location 4,590,531 – 4,590,621
Length 90
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 71.00
Mean single sequence MFE -29.05
Consensus MFE -12.84
Energy contribution -14.03
Covariance contribution 1.20
Combinations/Pair 1.35
Mean z-score -2.09
Structure conservation index 0.44
SVM decision value 1.30
SVM RNA-class probability 0.939547
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4590531 90 - 23771897
GUUUAUUGUAUUCCUCUAAAUUGUUGUUUAUGUCUGCAUUCAGACAGCAGACUGCAACUGCAGC------------U------------GCAACGGCAUUGGCGUUGCAAU-----GGG
..((((((((...(.((((..(((((((..((((((....))))))((((.((((....)))))------------)------------))))))))))))).).))))))-----)). ( -31.30)
>DroSec_CAF1 167181 90 - 1
GUUUAUUGUAUUCCUCUAAAUUGUUGUUUAUGUCUGCAUUCAGACAGCAGACUGCAACUGCAGC------------U------------GCAACGGCAAUGGCGUUGCAAU-----GGG
..((((((((..((.....(((((((((..((((((....))))))((((.((((....)))))------------)------------)))))))))))))...))))))-----)). ( -32.30)
>DroSim_CAF1 167618 90 - 1
GUUUAUUGUAUUCCUCUAAAUUGUUGUUUAUGUCUGCAUUCAGACAGCAGACUGCAACUGCAGC------------U------------GCAACGGCAAUGGCGUUGCAAU-----GGG
..((((((((..((.....(((((((((..((((((....))))))((((.((((....)))))------------)------------)))))))))))))...))))))-----)). ( -32.30)
>DroEre_CAF1 175595 114 - 1
GUUUAUUGUAUUCCUCUAAAUUGUUGUUUAUGUCUGCAUUCAGACAGCAAACUGCAACUGCAACUGCAGCUACAGCUGCAACGGCGAUGGCGAUGGCGAUGGCGAUGCAAU-----GGG
..((((((((((((((...(((((..((..((((((....))))))((....(((....)))..((((((....))))))...))))..)))))...)).)).))))))))-----)). ( -38.00)
>DroYak_CAF1 172585 96 - 1
GUUUAUUGUAUUCCUCUAAAUUGUUGUUUAUGUCUGCAUUCAGACAGCAAACUGCAACGGCG------------------CUGGCAAUGGCGAUGGCAAUGGCGAUGCAAU-----GGG
..((((((((((((......((((.((((.((((((....))))))..)))).))))((.((------------------((......)))).)).....)).))))))))-----)). ( -27.30)
>DroMoj_CAF1 228744 81 - 1
G-----UUCCAUGUUAAAA-AUCGUGUUUAUGUCUGCCA---G-CUUCUGAUUGUAGCUGCAGC------------U------------GCUGU---UAUGCC-UUGUUAUACCUCGAG
.-----...((((......-..)))).....(.((((.(---(-((.(.....).)))))))))------------.------------((...---...))(-(((........)))) ( -13.10)
>consensus
GUUUAUUGUAUUCCUCUAAAUUGUUGUUUAUGUCUGCAUUCAGACAGCAGACUGCAACUGCAGC____________U____________GCAACGGCAAUGGCGUUGCAAU_____GGG
............((........(((((....((((((.........)))))).)))))...............................((((((.(...).))))))........)). (-12.84 = -14.03 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:59 2006