| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,585,289 – 4,585,392 |
| Length | 103 |
| Max. P | 0.991448 |
| Location | 4,585,289 – 4,585,392 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 77.18 |
| Mean single sequence MFE | -19.20 |
| Consensus MFE | -14.83 |
| Energy contribution | -16.17 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.77 |
| SVM decision value | 2.27 |
| SVM RNA-class probability | 0.991448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4585289 103 + 23771897 GGACCGAAUGGACGAUAUUCUUUUCCCCCGAAAAAAAGCUCAACAUUUUUCGUCGCAAUAAAUCCUGAUUAACUAGUCAGCC-CUUCGAUCAAAACCUCAUGGU .((.((((.((.................(((((((..........)))))))............((((((....))))))))-.)))).))...(((....))) ( -16.60) >DroSec_CAF1 162089 90 + 1 GGACCGAAUGGUAGAUAUACUUUUCCCCCGCAAAAAAUA---------AUUAAAGCAAGAAAUCCUGAUUAAAUAGUCAGCAAAUUCGGUCAAAACCUC----- .((((((((((..((........))..))..........---------................((((((....))))))...))))))))........----- ( -19.40) >DroSim_CAF1 162524 90 + 1 GGACCGAAUGGGAGUUAUCCUCUUCCCCCGAAAAAAAUA---------AUUAAAGCAAGAAAUCCUGAUUAAAUAGUCAGCAAAUUCGGUCAAAACCUC----- .(((((((((((((........)))))............---------................((((((....))))))...))))))))........----- ( -21.60) >consensus GGACCGAAUGGAAGAUAUACUUUUCCCCCGAAAAAAAUA_________AUUAAAGCAAGAAAUCCUGAUUAAAUAGUCAGCAAAUUCGGUCAAAACCUC_____ .((((((((((((((.....))))))......................................((((((....))))))...))))))))............. (-14.83 = -16.17 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:58 2006