| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,573,543 – 4,573,644 |
| Length | 101 |
| Max. P | 0.658891 |
| Location | 4,573,543 – 4,573,644 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 81.55 |
| Mean single sequence MFE | -21.12 |
| Consensus MFE | -17.01 |
| Energy contribution | -17.35 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658891 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4573543 101 - 23771897 AAAUAAAAAUUUCACAAA----UUUUUUAUACAAA---CUGCGGCAAUCAAAUUGAAAGAUUUACAAAAUUUUUCAGCCUUUUGCCUGGGUAGGCGUGUUGCAUGCGC ..(((((((.........----.))))))).....---(((((((((.....((((((((((.....))))))))))....)))))...))))(((((...))))).. ( -21.20) >DroPse_CAF1 172667 107 - 1 GAACUAAAAUUUCACAAAAUUUUUUUUUAUACAAAAUACAGCGGCAAUCAAAUUGAAAGAUUUUCAAAAUCGUUCAGCCU-CUGCCUGGGUAGGCGUGCCGCCUGCAA (((..(((((((....)))))))..)))..........((((((((.......((((.((((.....)))).))))((((-..((....)))))).))))).)))... ( -23.40) >DroEre_CAF1 158574 90 - 1 AAAUAAAAAUUU---------------UAUACAAA---CUGCGGCAAUCAAAUUGAAAGAUUUCUAAAAUUUUUCAGCCUUUUGCCUGGGUAGGCGUGUUGCAUGCGC ............---------------........---(((((((((.....((((((((((.....))))))))))....)))))...))))(((((...))))).. ( -20.10) >DroYak_CAF1 155423 101 - 1 AAACAAAAAUUUCACAAA----UUUUGUAUACAAA---CUGCGGCAAUCAAAUUGAAAGAUUUACAAAAUUUUUCAGCCUUUUGCCUGGGUAGGCGUGUUGCAUGCGC ..((((((..........----)))))).......---(((((((((.....((((((((((.....))))))))))....)))))...))))(((((...))))).. ( -21.40) >DroAna_CAF1 152958 97 - 1 GAAUG-AAAUUUCACAAA----UUUUUUUUACUAA---CU--GGCAAUCAAAUAGAAAGAUUUACAAAAUUUUUCACCC-UUUGCCUGGGCAGUCGUGCUGCAUGCGC (((..-....))).....----........(((..---((--(((((.......((((((((.....))))))))....-.))))).))..))).((((.....)))) ( -17.20) >DroPer_CAF1 169173 107 - 1 GAACUAAAAUUUCACAAAAUUUUUUUUUAUACAAAAUACAGCGGCAAUCAAAUUGAAAGAUUUUCAAAAUCGUUCAGCCU-CUGCCUGGGUAGGCGUGCCGCCUGCAA (((..(((((((....)))))))..)))..........((((((((.......((((.((((.....)))).))))((((-..((....)))))).))))).)))... ( -23.40) >consensus AAACAAAAAUUUCACAAA____UUUUUUAUACAAA___CUGCGGCAAUCAAAUUGAAAGAUUUACAAAAUUUUUCAGCCUUUUGCCUGGGUAGGCGUGCUGCAUGCGC ........................................((((((.......(((((((((.....)))))))))(((...(((....)))))).))))))...... (-17.01 = -17.35 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:54 2006