Locus 157

Sequence ID 3L_DroMel_CAF1
Location 495,871 – 495,961
Length 90
Max. P 0.871027
window224

overview

Window 4

Location 495,871 – 495,961
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 87.88
Mean single sequence MFE -27.20
Consensus MFE -20.06
Energy contribution -20.90
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -2.20
Structure conservation index 0.74
SVM decision value 0.87
SVM RNA-class probability 0.871027
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 495871 90 + 23771897
AGCCAACCGACUUAUCUGCGAAUUCUUCUAAGAAUCGCGUUGGCACUGCCUGCGCUGUCUUCCACCGAUUUGGCCAUUCAAGCCGGGUUG
.((((((.((....)).((((.((((....))))))))))))))...(((((.(((.....(((......))).......)))))))).. ( -27.00)
>DroSec_CAF1 76170 81 + 1
GGCCAACCGACUUAUCUGCGAAUUCUUCUAAGAAUCGCGUUGGCACU---------GUCUUCCACCGAUUUGGCCAUUCACGCCGAGUUG
.((((((.((....)).((((.((((....))))))))))))))...---------.........(((((((((.......))))))))) ( -25.20)
>DroSim_CAF1 77533 81 + 1
AGCCAACCGACUUAUCUGCGAAUUCUUCUAAGAAUCGCGUUGGCACU---------GUCUUCCACCGAUUUGGCCAUUCACGCCGAGUUG
.((((((.((....)).((((.((((....))))))))))))))...---------.........(((((((((.......))))))))) ( -25.40)
>DroEre_CAF1 79064 90 + 1
AGGCAACCGACUUAUCUGCGAAUUCUUCUAAGAAUCGCGUUGGCACUGCCAGCGCUGUGUUCCACCGAUUUGGCCAUUCAAGCCGAGUUG
.((.(((((.(......((((.((((....))))))))((((((...))))))).)).)))))..(((((((((.......))))))))) ( -28.60)
>DroYak_CAF1 80110 85 + 1
----AAGCGACUUAUCUGCGAAUUCUUCUAAGAAUCGCGUUGGCACUGCCAGCGUUGUGUA-CACCGAUUUGGCCAUUCAAGCCGAGUUG
----..(((((......((((.((((....))))))))((((((...)))))))))))...-...(((((((((.......))))))))) ( -29.80)
>consensus
AGCCAACCGACUUAUCUGCGAAUUCUUCUAAGAAUCGCGUUGGCACUGCC_GCG_UGUCUUCCACCGAUUUGGCCAUUCAAGCCGAGUUG
.((((((.((....)).((((.((((....)))))))))))))).....................(((((((((.......))))))))) (-20.06 = -20.90 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:03 2006