Locus 1569

Sequence ID 3L_DroMel_CAF1
Location 4,572,498 – 4,572,593
Length 95
Max. P 0.862214
window2434

overview

Window 4

Location 4,572,498 – 4,572,593
Length 95
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 80.77
Mean single sequence MFE -21.88
Consensus MFE -16.70
Energy contribution -18.70
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.76
SVM decision value 0.83
SVM RNA-class probability 0.862214
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4572498 95 + 23771897
UCUGUUUCCACUGGAGCUAAUCCAGGCAUCUAGAGGAUUUUUUUUGAUCAUAGUGGGUUUAGAUAUCUAUUAAAAAUAUCGAUCAGUU-UUAAAAG
......(((.((((((((......))).))))).)))......((((((.((((((((......))))))))........))))))..-....... ( -19.60)
>DroSec_CAF1 149397 95 + 1
UCUGUUUCCACUGGAGCUAAUCCAGGAAUCUAGAGGAUUU-GUUUGAUCAUAGUGGGCUUAGAAAUCUUUUAAAAAUAUCGAUCAGUUUUUAAAAG
((((..(((((((((((.(((((...........))))).-)))).....)))))))..))))...(((((((((((........))))))))))) ( -23.60)
>DroSim_CAF1 149665 95 + 1
UCUGUUUCCACUGGAGCUAAUCCAGGCAUCUAGAGGAUUU-GUUUGAUCAUAGUGGGUUUAGAAAUCUUUUAAAAAUAUCGAUCAGUUUUUAAAAG
((((..(((((((((((.(((((...........))))).-)))).....)))))))..))))...(((((((((((........))))))))))) ( -24.40)
>DroEre_CAF1 157536 74 + 1
UCUGUUUCCCCUGGAGUAGAUCCAGGCAUCUAGACGAUUU-GUUUGAUC-UAAUGGGUUUAGAUAGCUU--------------------UUGCAAG
((((..(((((((((.....))))))....(((((((...-..))).))-))..)))..))))..((..--------------------..))... ( -19.90)
>consensus
UCUGUUUCCACUGGAGCUAAUCCAGGCAUCUAGAGGAUUU_GUUUGAUCAUAGUGGGUUUAGAAAUCUUUUAAAAAUAUCGAUCAGUU_UUAAAAG
((((..(((.(((((.....)))))....(((...((((......)))).))).)))..))))...(((((((((((........))))))))))) (-16.70 = -18.70 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:53 2006