Locus 1568

Sequence ID 3L_DroMel_CAF1
Location 4,571,707 – 4,571,823
Length 116
Max. P 0.839548
window2433

overview

Window 3

Location 4,571,707 – 4,571,823
Length 116
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 84.89
Mean single sequence MFE -27.52
Consensus MFE -23.10
Energy contribution -24.55
Covariance contribution 1.45
Combinations/Pair 1.08
Mean z-score -2.10
Structure conservation index 0.84
SVM decision value 0.75
SVM RNA-class probability 0.839548
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4571707 116 + 23771897
AUGCGUUAGUCGACUGCAGAUCCUUCAAGAAAGAAACGAGGGAUCUGAGGUCAAAUAGAUACAAAGAUACAAACCUAGACUAGUUUCAUACGAGGCGAAAAUAGAGUUUAAUAUUU
...........((((.((((((((((...........)))))))))).))))..................(((((((.....(((((....))))).....))).))))....... ( -29.30)
>DroSec_CAF1 148609 116 + 1
AUGCGUUAGUCGACUGCAGAUCCUUCAAGAAGGAAACGAGGGAUCUGAGGUCAAAUAGAUACAAAGAUACAAACCUAGACUAGUUUCAUACGAGGCGAUAAUAGAGUUUAAUAUUU
...........((((.((((((((((.....(....))))))))))).))))..................(((((((.....(((((....))))).....))).))))....... ( -30.20)
>DroSim_CAF1 148877 116 + 1
AUGCGUUAGUCGACUGCAGAUCCUUCAAGAAAGAAACGAGGGAUCUGAGGUCAAAUAGAUACAAAGAUACAAACCUAGACUAGUUUCAUACGAGGCGAAAAUAGAGUUUAAUAUUU
...........((((.((((((((((...........)))))))))).))))..................(((((((.....(((((....))))).....))).))))....... ( -29.30)
>DroEre_CAF1 156693 116 + 1
AUGCGUUAGCCGACUGCGGAUCCUUCAAGAAACACACGAGGGAUCUGAGGUCAAGUAGAUACAAAGAUACAAACCUAGACUAGUUUCAUACGAGGCGAAAAUAGAGUUUAAUAUUU
.((..((.((.((((.((((((((((...........)))))))))).))))..)).))..)).......(((((((.....(((((....))))).....))).))))....... ( -29.60)
>DroYak_CAF1 153552 116 + 1
AUGCGUUAGCCGACUGCAGAUCCUUCACGAAAGAAACGAGGGAUCUGAGGUCACAUAGAUACAAAGAUACAAACCUAGACUAGUUUCAUACGAGGCGAAAAUAGAGUUUAAUAUUU
..((....)).((((.((((((((((.(....)....)))))))))).))))..................(((((((.....(((((....))))).....))).))))....... ( -31.50)
>DroAna_CAF1 151041 90 + 1
AUGCAUUCGCCAGCAGCUGGCCC----AAAAAUAUCCGAGGGUCCUU------------UAUA-------AAACCUAGACUAGUUUAUUACGAGGCGA---UAGAGUUUAAUAUUU
......(((((.......(((((----............)))))...------------....-------((((........)))).......)))))---............... ( -15.20)
>consensus
AUGCGUUAGCCGACUGCAGAUCCUUCAAGAAAGAAACGAGGGAUCUGAGGUCAAAUAGAUACAAAGAUACAAACCUAGACUAGUUUCAUACGAGGCGAAAAUAGAGUUUAAUAUUU
...........((((.((((((((((...........)))))))))).))))..................(((((((.....(((((....))))).....))).))))....... (-23.10 = -24.55 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:52 2006