Locus 1566

Sequence ID 3L_DroMel_CAF1
Location 4,570,248 – 4,570,342
Length 94
Max. P 0.597305
window2430

overview

Window 0

Location 4,570,248 – 4,570,342
Length 94
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 72.70
Mean single sequence MFE -24.84
Consensus MFE -6.14
Energy contribution -7.06
Covariance contribution 0.92
Combinations/Pair 1.18
Mean z-score -1.66
Structure conservation index 0.25
SVM decision value 0.13
SVM RNA-class probability 0.597305
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4570248 94 - 23771897
AAUGU---------AUCUCGGCUCGCGUUUGUCCU---------UAGCAGUUUUAAAUUUAAAGCUUUCAACUGAAAUGUGCAGAGCUGUAUGCUAAUGGCACUCAG--------CUCAA
..(((---------((.((((...((.........---------..))(((((((....))))))).....))))...)))))((((((..(((.....)))..)))--------))).. ( -24.40)
>DroSec_CAF1 147174 94 - 1
AAUGU---------AUCUUGUCGAGCGUUUGUCCU---------CAGCGCUUUUAAAUUUAAAGCUAUCAACUGAAAUGUGCGGAGCUGUAUGCUAAUGGCACUCAG--------CUCAA
..(((---------((....(((((.(.....)))---------)...(((((.......)))))........))...)))))((((((..(((.....)))..)))--------))).. ( -23.60)
>DroSim_CAF1 147444 94 - 1
AAUGU---------AUCUUGUCGAGCGUUUGUCCU---------CAGCGCUUUUAAAUUUAAAGCUAUCAACUGAAAUGUGCAGAGCUGUAUGCUAAUGGCACUCAG--------CUCAA
..(((---------((....(((((.(.....)))---------)...(((((.......)))))........))...)))))((((((..(((.....)))..)))--------))).. ( -24.50)
>DroYak_CAF1 152159 94 - 1
AAUUU---------AUCUUUUUGAGCGCUCAUCCU---------UAGCAGUUUUAAAUUUAAAGCUAUCAACCGAAAUGUGCGGAGCUGUAUGCUAAUGGCGCUCAG--------CUCAA
.....---------......((((((((.(((...---------(((((((((((....))))))).....(((.......)))........)))))))))))))))--------..... ( -25.20)
>DroAna_CAF1 149937 119 - 1
AGUUUUCAGUAGACAUUUUUCCGAGUGCUCCUAUUCUAGGAUUCAAGGAGUGUUAAAUGGCCAGCUAUCAACUGAAAUAUUUCAAGUUCCAUGCUAAUG-CUCCCAGCAGCAGGACUAAA
.((((.....)))).....(((...((((((((...))))).....(((((((((.((((..((((......((((....))))))))))))..)))))-))))..)))...)))..... ( -26.50)
>consensus
AAUGU_________AUCUUGUCGAGCGUUUGUCCU_________CAGCAGUUUUAAAUUUAAAGCUAUCAACUGAAAUGUGCAGAGCUGUAUGCUAAUGGCACUCAG________CUCAA
.......................................................................((((...((((..(((.....)))....))))))))............. ( -6.14 =  -7.06 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:49 2006