Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,560,985 – 4,561,115 |
Length | 130 |
Max. P | 0.988651 |
Location | 4,560,985 – 4,561,076 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 80.07 |
Mean single sequence MFE | -33.80 |
Consensus MFE | -25.45 |
Energy contribution | -26.65 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.22 |
Mean z-score | -2.53 |
Structure conservation index | 0.75 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950146 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4560985 91 + 23771897 UACGAUGUGCCACCGCAGGAGGUAAGUUCCGGUGGCAGUUCCGGUUCUGGUUGAUACCGAAAAAAAA--ACU-GUUGCAACCUGCAGUGGCAGC .......((((((.(((((.((......)).(..((((((....(((.(((....)))))).....)--)))-))..)..))))).)))))).. ( -37.20) >DroSec_CAF1 137976 89 + 1 UACGAUGUGCCACCGCAGGAGGUAAGUUCCGGUGGCAGUUCCGGUUCCGGUUGAUACCGAAAA--AA--GCA-GUUGCAACCUGCAGUGGCAGC .......((((((.(((((..(((((..((((........))))..)((((....))))....--..--...-.))))..))))).)))))).. ( -35.30) >DroSim_CAF1 138205 89 + 1 UACGAUGUGCCACCGCAGGAGGUAAGUUCCGGUGGCAGUUCCGGUUCCGGUUGAUACCGAAAA--AA--GCU-GUUGCAACCUGCAGUGGCAGU .......((((((.(((((.((......)).(..((((((....((.((((....)))).)).--.)--)))-))..)..))))).)))))).. ( -37.40) >DroEre_CAF1 146018 89 + 1 UACGACGUGCCACCGCAGGAGGUAAGUUCCGGUAACAGUUCCGGUUCCGGUUGGGACCGAAAA--AA--GCA-GUUGCAACCUGCAGUGGCAGC .......((((((.(((((.((......)).(((((.(((.(((((((....)))))))....--.)--)).-)))))..))))).)))))).. ( -37.50) >DroWil_CAF1 121563 85 + 1 UAUGAUGUGCCGCCGCAGGAGGUAAGUUUUUGGAGCAAGGCUACUUGCCGCUUGCAACAAAUU--CA--UAA-AUGACUACUUGUA----CAUC ...(((((((....(((((.((((((((((((...)))))..))))))).))))).......(--((--...-.)))......)))----)))) ( -23.80) >DroYak_CAF1 142488 92 + 1 UACGACGUACCACCGCAGGAGGUAAGUUCCGGUAACAUUUCCGGUUCCGGUUGGGACCGAAAA--AAUAGCAGGUUGCAACCUGCAGUGGCAGC .........((((.(((((..((((...((.((....(((.(((((((....))))))).)))--....)).))))))..))))).)))).... ( -31.60) >consensus UACGAUGUGCCACCGCAGGAGGUAAGUUCCGGUAGCAGUUCCGGUUCCGGUUGAUACCGAAAA__AA__GCA_GUUGCAACCUGCAGUGGCAGC .......((((((.(((((..((((...((((........))))...((((....))))...............))))..))))).)))))).. (-25.45 = -26.65 + 1.20)
Location | 4,560,985 – 4,561,076 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 80.07 |
Mean single sequence MFE | -33.27 |
Consensus MFE | -26.25 |
Energy contribution | -27.75 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.17 |
Mean z-score | -3.17 |
Structure conservation index | 0.79 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4560985 91 - 23771897 GCUGCCACUGCAGGUUGCAAC-AGU--UUUUUUUUCGGUAUCAACCAGAACCGGAACUGCCACCGGAACUUACCUCCUGCGGUGGCACAUCGUA ..((((((((((((......(-(((--(((..((..(((....)))..))..))))))).....((......)).))))))))))))....... ( -33.40) >DroSec_CAF1 137976 89 - 1 GCUGCCACUGCAGGUUGCAAC-UGC--UU--UUUUCGGUAUCAACCGGAACCGGAACUGCCACCGGAACUUACCUCCUGCGGUGGCACAUCGUA ..((((((((((((..((...-.))--..--.(((((((....)))))))((((........)))).........))))))))))))....... ( -36.90) >DroSim_CAF1 138205 89 - 1 ACUGCCACUGCAGGUUGCAAC-AGC--UU--UUUUCGGUAUCAACCGGAACCGGAACUGCCACCGGAACUUACCUCCUGCGGUGGCACAUCGUA ..((((((((((((..((...-.))--..--.(((((((....)))))))((((........)))).........))))))))))))....... ( -36.60) >DroEre_CAF1 146018 89 - 1 GCUGCCACUGCAGGUUGCAAC-UGC--UU--UUUUCGGUCCCAACCGGAACCGGAACUGUUACCGGAACUUACCUCCUGCGGUGGCACGUCGUA ((((((((((((((..((...-.))--..--.(((((((..((.(((....)))...))..))))))).......)))))))))))).)).... ( -37.70) >DroWil_CAF1 121563 85 - 1 GAUG----UACAAGUAGUCAU-UUA--UG--AAUUUGUUGCAAGCGGCAAGUAGCCUUGCUCCAAAAACUUACCUCCUGCGGCGGCACAUCAUA ((((----(.(..(((((((.-...--))--).((((..((((..(((.....)))))))..))))..........))))....).)))))... ( -19.30) >DroYak_CAF1 142488 92 - 1 GCUGCCACUGCAGGUUGCAACCUGCUAUU--UUUUCGGUCCCAACCGGAACCGGAAAUGUUACCGGAACUUACCUCCUGCGGUGGUACGUCGUA ((((((((((((((..((.....))....--.(((((((..((.(((....)))...))..))))))).......)))))))))))).)).... ( -35.70) >consensus GCUGCCACUGCAGGUUGCAAC_UGC__UU__UUUUCGGUACCAACCGGAACCGGAACUGCCACCGGAACUUACCUCCUGCGGUGGCACAUCGUA ..((((((((((((..(...............(((((((....)))))))((((........))))......)..))))))))))))....... (-26.25 = -27.75 + 1.50)
Location | 4,561,025 – 4,561,115 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 93.56 |
Mean single sequence MFE | -27.22 |
Consensus MFE | -23.04 |
Energy contribution | -23.24 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.10 |
Structure conservation index | 0.85 |
SVM decision value | 2.13 |
SVM RNA-class probability | 0.988651 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4561025 90 - 23771897 CAACAACAACAACAUCGAAGAAGGCAGCAUAUGUUUGUGGCUGCCACUGCAGGUUGCAAC-AGU--UUUUUUUUCGGUAUCAACCAGAACCGG .............((((((((((((((((((....))).))))))..(((.....)))..-...--...)))))))))............... ( -22.30) >DroSec_CAF1 138016 88 - 1 CAACAACAACAACAUCGAAGACGGCAGCAUAUGUUUGUGGCUGCCACUGCAGGUUGCAAC-UGC--UU--UUUUCGGUAUCAACCGGAACCGG .............((((((((.(((((((((....))).))))))...((((.......)-)))--..--)))))))).....(((....))) ( -27.90) >DroSim_CAF1 138245 88 - 1 CAACAACAACAACAUCGAAGAAGGCAGCAUAUGUUUGUGACUGCCACUGCAGGUUGCAAC-AGC--UU--UUUUCGGUAUCAACCGGAACCGG .............((((((((((((((((((....)))).)))))..(((.....)))..-...--.)--)))))))).....(((....))) ( -25.80) >DroEre_CAF1 146058 88 - 1 CAACAACAACAACAUCGAAGAAGGCAGCAUAUGUCUGUGGCUGCCACUGCAGGUUGCAAC-UGC--UU--UUUUCGGUCCCAACCGGAACCGG .............((((((((((((((((((....))))((.(((......))).))..)-)))--))--)))))))).....(((....))) ( -28.00) >DroYak_CAF1 142528 91 - 1 CAACAACAACAACAUCGAAGAAGGCAGCAUAUGUUUGUGGCUGCCACUGCAGGUUGCAACCUGCUAUU--UUUUCGGUCCCAACCGGAACCGG .............((((((((((((((((((....))).))))))...((((((....))))))...)--)))))))).....(((....))) ( -32.10) >consensus CAACAACAACAACAUCGAAGAAGGCAGCAUAUGUUUGUGGCUGCCACUGCAGGUUGCAAC_UGC__UU__UUUUCGGUAUCAACCGGAACCGG .............((((((((.(((((((((....)))).)))))..(((.....)))............)))))))).....(((....))) (-23.04 = -23.24 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:43 2006