Locus 1562

Sequence ID 3L_DroMel_CAF1
Location 4,558,326 – 4,558,420
Length 94
Max. P 0.995477
window2421

overview

Window 1

Location 4,558,326 – 4,558,420
Length 94
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 92.80
Mean single sequence MFE -28.07
Consensus MFE -23.32
Energy contribution -23.72
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.49
Structure conservation index 0.83
SVM decision value 2.58
SVM RNA-class probability 0.995477
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4558326 94 + 23771897
CCGCUAAUUGCCAGCAGCUGCAGCCAGCAAACUGGU--------------AACUGGUUACGGGUAACUGAAAACGGAAAGCUGCAACCCAAACCAAA-AACCAGAAGGC
..(((..(((((((..((((....))))...)))))--------------))((((((...(((.........(((....)))........)))...-))))))..))) ( -25.33)
>DroSec_CAF1 135405 94 + 1
CCGCUAAUUGCCAGCAGCUGCAGCCAGCAAACUGGU--------------AACUGGUUACGGGUAACUGAAAACGGAAAGCUGCAAACCAGACCAAA-AACCAGAAGGC
..(((..(((((((..((((....))))...)))))--------------))((((((...(((..(((....(((....))).....))))))...-))))))..))) ( -27.60)
>DroSim_CAF1 135255 94 + 1
CCGCUAAUUGCCAGCAGCUGCAGCCAGCAAACUGGU--------------AACUGGUUACGGGUAACUGAAAACGGAAAGCUGCAAACCAGACCAAA-AACCAGAAGGC
..(((..(((((((..((((....))))...)))))--------------))((((((...(((..(((....(((....))).....))))))...-))))))..))) ( -27.60)
>DroEre_CAF1 143388 94 + 1
CCGCUAAUUGCCAGCAGCUGCAGCCAGAAAACUGGU--------------AACUGGUUACGGGUAACUGAAAACGGAAAGCUGCAAACCAGACCAAA-AACCAGAAGGC
..(((..(((((((...(((....)))....)))))--------------))((((((...(((..(((....(((....))).....))))))...-))))))..))) ( -24.90)
>DroYak_CAF1 139739 109 + 1
CCGCUAAUUGCCAGCAGCUGCAGCCAGCAAACUGGUAACUGGUAACUGGUAACUGGUUACGGGUAACUGAAAACGGAAAGCUGCAAACCAGACCAAAAAACCAGAAGGC
..(((..(((((((..((((....))))...)))))))(((((...((((..((((((.(((.(..(((....)))..).)))..))))))))))....)))))..))) ( -34.90)
>consensus
CCGCUAAUUGCCAGCAGCUGCAGCCAGCAAACUGGU______________AACUGGUUACGGGUAACUGAAAACGGAAAGCUGCAAACCAGACCAAA_AACCAGAAGGC
..(((....(((((..((((....))))...)))))................((((((...(((..(((....(((....))).....))))))....))))))..))) (-23.32 = -23.72 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:40 2006