Locus 1561

Sequence ID 3L_DroMel_CAF1
Location 4,554,454 – 4,554,544
Length 90
Max. P 0.860756
window2420

overview

Window 0

Location 4,554,454 – 4,554,544
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 86.18
Mean single sequence MFE -25.95
Consensus MFE -19.52
Energy contribution -20.08
Covariance contribution 0.56
Combinations/Pair 1.18
Mean z-score -3.41
Structure conservation index 0.75
SVM decision value 0.83
SVM RNA-class probability 0.860756
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4554454 90 - 23771897
UACACGGUGUCAACUGUCGCACCACAGUGCGUAUGAGUGUCAUUAUGUUUGACAUUCAUUCACAUCACUCCACAAAAGGGGCACUCCACU
.....(((((........)))))..((((((.((((((((((.......)))))))))).).......(((......))))))))..... ( -27.20)
>DroSim_CAF1 131225 90 - 1
UACACGGUGUCAACUGUCGCACCACAGUGCGUAUGAGUGUCAUUAUGUUUGACAUUCAUUCACAUCACUCCACAAAAGGAGCACUCCACU
.....(((((........)))))..((((((.((((((((((.......)))))))))).).......(((......))))))))..... ( -28.30)
>DroEre_CAF1 139491 90 - 1
UACACGGUGUCAACUGUCGUACCACAGUGCGUAUGAGUGUCAUUAUGUUUGACAUUCAUUCACAUCACUCCACAAAAGGAGCACUCCACU
((((((((....))))).)))....((((((.((((((((((.......)))))))))).).......(((......))))))))..... ( -27.20)
>DroWil_CAF1 114676 81 - 1
---UUCGUGUGAAAUGUCGCACCACACGGCGUAUGAGUGUCAUUAUGUUUGACAUUUAUGCACAACAUUCCAUU------CUACUCCACU
---.(((((((...........))))))).((((((((((((.......)))))))))))).............------.......... ( -22.50)
>DroYak_CAF1 135637 90 - 1
UACAUGGUGUCAACUGUUGUCCCACAGUGCGUAUGAGUGUCAUUAUGUUUGACAUUCAUUCACAUCACUCCACAAAGGGAGCACUCCACU
....((((((..(((((......)))))..(.((((((((((.......)))))))))).)))))))((((......))))......... ( -25.90)
>DroAna_CAF1 133377 86 - 1
---GCCGUGUCAGCUGUCGCACCACAGUGCGUAUGAGUGUCAUUAUGUUUGACAUUCAUUCACAACACUCCACAA-AGGAGCCCUCCCCU
---...(((........(((((....))))).((((((((((.......)))))))))).)))....((((....-.))))......... ( -24.60)
>consensus
UACACGGUGUCAACUGUCGCACCACAGUGCGUAUGAGUGUCAUUAUGUUUGACAUUCAUUCACAUCACUCCACAAAAGGAGCACUCCACU
......(((........(((((....))))).((((((((((.......)))))))))).)))....((((......))))......... (-19.52 = -20.08 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:39 2006