Locus 1560

Sequence ID 3L_DroMel_CAF1
Location 4,553,420 – 4,553,536
Length 116
Max. P 0.799825
window2419

overview

Window 9

Location 4,553,420 – 4,553,536
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.01
Mean single sequence MFE -27.08
Consensus MFE -18.42
Energy contribution -18.42
Covariance contribution -0.00
Combinations/Pair 1.17
Mean z-score -2.09
Structure conservation index 0.68
SVM decision value 0.61
SVM RNA-class probability 0.799825
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4553420 116 - 23771897
----AUAUGUGUGUGUGGAAGUUUGAACAGUUUUUCAGCUAUUUUGUAUGGACGACAAGUUUCCAGCUCAAUUAACUUGUACAGCAUUUCAAAAAAUUUGAGGCUUUUACACAAAUUACA
----...(((((((((((((((((.((.(((......))).(((((.(((....(((((((............)))))))....)))..)))))...)).)))))))))))))...)))) ( -25.30)
>DroSec_CAF1 130403 97 - 1
----AUAUGUGUGUGUGAAAGUUUGAACAGUUUUUCA-------------------GAGUUUCCAGCUCAAUUAACUUGUACAGCAUUUCAAAAAAUGUGAGGCUUUUACAUAAAUUACA
----...((((((((((((((((((.((((((.....-------------------((((.....))))....))).))).).((((((....)))))).)))))))))))))...)))) ( -21.40)
>DroSim_CAF1 130187 116 - 1
----AUAUGUGUGUGUGGAAGUUUGAACAGUUUUUCAACUAUUUUGUAUGGACGACGAGUUUCCAGCUCAAUUAACUUGUACAGCAUUUCAAAAAAUGUGAGGCUUUUACAUAAAUUACA
----...((((((((((((((((((.((((((.((((((......)).)))).)))((((.....))))........))).).((((((....)))))).)))))))))))))...)))) ( -24.90)
>DroEre_CAF1 138430 116 - 1
----AUAUGUGUGUGUAGAAGUCUCAACAAUUUUUCAACUAUUUUGUAUGGACGCCGAGUUUCCAGCUCAAUUAACUGGUACAGCAUUCAAACAAAUGUGAGGCUUUUACAUAAAUUAAA
----.......(((((((((((((((.((.............(((((.((((.((...((..((((.........)))).)).)).)))).))))))))))))))))))))))....... ( -29.61)
>DroYak_CAF1 134586 120 - 1
ACACAUAUGUGUGUGUAGAAGUCCCAACAAUUUUGCAACUAUUUUGUAUGGACGCCGAGUUUCCAGCUCAAUUAAGCUGUGGAGCAUUUGAAAAAAUGUGAGGCUUUUACAUAAAUUAAA
((((....))))((((((((((((((..(((((.((..((((.....))))..)).)))))..(((((......)))))))).((((((....))))))..)))))))))))........ ( -34.20)
>consensus
____AUAUGUGUGUGUGGAAGUUUGAACAGUUUUUCAACUAUUUUGUAUGGACGACGAGUUUCCAGCUCAAUUAACUUGUACAGCAUUUCAAAAAAUGUGAGGCUUUUACAUAAAUUACA
...........(((((((((((((................................((((.....))))..............((((((....)))))).)))))))))))))....... (-18.42 = -18.42 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:38 2006