Locus 156

Sequence ID 3L_DroMel_CAF1
Location 494,487 – 494,578
Length 91
Max. P 0.786001
window223

overview

Window 3

Location 494,487 – 494,578
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 92.67
Mean single sequence MFE -33.60
Consensus MFE -28.35
Energy contribution -29.13
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -2.38
Structure conservation index 0.84
SVM decision value 0.57
SVM RNA-class probability 0.786001
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 494487 91 - 23771897
UGUGGGGUCUCCGAUCUCUGGGGUCUCGGAUCUCAGAUCUCCGAGGUCUGUGGGCCUUGUGGCCAAACUUUAUGUUCCACAUGUUUCGGUC
((((((..(((.((..(((((((((...)))))))))..)).)))..)....((((....))))............))))).......... ( -34.10)
>DroSec_CAF1 74814 91 - 1
UGUGGGGUCUCCGAUCUCAGGGGUCUUGGAUCUCGGAUCUCCGAGGUCUGUGGGCAUUGUGGCCAAACUUUAUGUUCCACAUGUUUUGGUC
(.(((((((...))))))).).((((((((((((((....)))))))))).)))).....(((((((...((((.....)))).))))))) ( -32.60)
>DroYak_CAF1 78702 91 - 1
UCUGGGGUCUCAGAUCUCUGGGCUCUCAGGUCUCAGAUCUCCGAGGUCUGUGGGCCUUGUGGCCAAACUUUAUGUUCCACAUGUUUUGGUC
...((((((...)))))).((((((.(((..(((.(....).)))..))).))))))...(((((((...((((.....)))).))))))) ( -34.10)
>consensus
UGUGGGGUCUCCGAUCUCUGGGGUCUCGGAUCUCAGAUCUCCGAGGUCUGUGGGCCUUGUGGCCAAACUUUAUGUUCCACAUGUUUUGGUC
...((((((((.((((((.(((((((........))))))).)))))).).)))))))..(((((((...((((.....)))).))))))) (-28.35 = -29.13 +   0.78) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:02 2006