Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 494,487 – 494,578 |
Length | 91 |
Max. P | 0.786001 |
Location | 494,487 – 494,578 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 92.67 |
Mean single sequence MFE | -33.60 |
Consensus MFE | -28.35 |
Energy contribution | -29.13 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -2.38 |
Structure conservation index | 0.84 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786001 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 494487 91 - 23771897 UGUGGGGUCUCCGAUCUCUGGGGUCUCGGAUCUCAGAUCUCCGAGGUCUGUGGGCCUUGUGGCCAAACUUUAUGUUCCACAUGUUUCGGUC ((((((..(((.((..(((((((((...)))))))))..)).)))..)....((((....))))............))))).......... ( -34.10) >DroSec_CAF1 74814 91 - 1 UGUGGGGUCUCCGAUCUCAGGGGUCUUGGAUCUCGGAUCUCCGAGGUCUGUGGGCAUUGUGGCCAAACUUUAUGUUCCACAUGUUUUGGUC (.(((((((...))))))).).((((((((((((((....)))))))))).)))).....(((((((...((((.....)))).))))))) ( -32.60) >DroYak_CAF1 78702 91 - 1 UCUGGGGUCUCAGAUCUCUGGGCUCUCAGGUCUCAGAUCUCCGAGGUCUGUGGGCCUUGUGGCCAAACUUUAUGUUCCACAUGUUUUGGUC ...((((((...)))))).((((((.(((..(((.(....).)))..))).))))))...(((((((...((((.....)))).))))))) ( -34.10) >consensus UGUGGGGUCUCCGAUCUCUGGGGUCUCGGAUCUCAGAUCUCCGAGGUCUGUGGGCCUUGUGGCCAAACUUUAUGUUCCACAUGUUUUGGUC ...((((((((.((((((.(((((((........))))))).)))))).).)))))))..(((((((...((((.....)))).))))))) (-28.35 = -29.13 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:02 2006