Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,552,355 – 4,552,450 |
Length | 95 |
Max. P | 0.965521 |
Location | 4,552,355 – 4,552,450 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 72.35 |
Mean single sequence MFE | -23.49 |
Consensus MFE | -8.56 |
Energy contribution | -8.45 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.30 |
Mean z-score | -2.46 |
Structure conservation index | 0.36 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965521 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4552355 95 - 23771897 UUCACACUCAUAAAAUAUGAAUAGACGGG--GUC---GGAAUUUAUUCGACGCCGCCACCGUG--GUCGAAUGAAAUAUGCCAGUUCAGUUUAUGAAACUGA .(((...(((((((...(((((.(.(((.--(((---(((.....)))))).))).)....((--((............))))))))).)))))))...))) ( -25.40) >DroPse_CAF1 143595 89 - 1 UUCGCACUCAUAAAAUAUGAAUGGCCAUG--GCAAAAAAAAUUUAUUCGACA---------UG--AAUGAAUGAAAUAUGGACAUUCAGUUUAUGAAGCUGA ...((..(((((((...((((((.(((((--.........((((((((....---------.)--)))))))....))))).)))))).))))))).))... ( -24.12) >DroYak_CAF1 133454 95 - 1 UUCGCACUCAUAAAAUAUGAAUAGACGGG--GUC---GGAAUUUAUUCGACGCCGCCAACGUG--GCCGAAUGAAAUAUGCCAGUUCAGUUUAUGAAACUGA .......(((((((...(((((.(.(((.--(((---(((.....)))))).))).)....((--((............))))))))).)))))))...... ( -26.70) >DroMoj_CAF1 183583 82 - 1 UUC-G-UUCAUAAAAUAUGAAAGCGCAGU--G------AAAUUUAUUCAGCUCGACCAAC----------AUGAAAUAUGCGCAUUCAGUUUAUGAAGCUGA ...-.-((((((((...((((.(((((.(--(------((.....))))..(((......----------.)))....))))).)))).))))))))..... ( -18.50) >DroAna_CAF1 131568 99 - 1 UUUUCGCUCAUAAAAUAUGAAUGGCCAGGCAGGA---GGAAUUUAUUCAACGGGCCGAACGGGGAGCUGAAUGAAAUAUGCCAGUUUGGUUUAUGAAACUGA .(((((.(((((...)))))..((((((((.((.---....((((((((.(...((......)).).)))))))).....)).))))))))..))))).... ( -22.10) >DroPer_CAF1 144852 89 - 1 UUCGCACUCAUAAAAUAUGAAUGGCCAUG--GCAAAAAAAAUUUAUUCGACA---------UG--AAUGAAUGAAAUAUGGACAUUCAGUUUAUGAAGCUGA ...((..(((((((...((((((.(((((--.........((((((((....---------.)--)))))))....))))).)))))).))))))).))... ( -24.12) >consensus UUCGCACUCAUAAAAUAUGAAUGGCCAGG__GCA___GAAAUUUAUUCGACGC__CCAAC_UG__GAUGAAUGAAAUAUGCCAAUUCAGUUUAUGAAACUGA .......(((((((...(((((.(.((..............((((((((..................))))))))...)).).))))).)))))))...... ( -8.56 = -8.45 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:37 2006