Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,550,517 – 4,550,610 |
Length | 93 |
Max. P | 0.787457 |
Location | 4,550,517 – 4,550,610 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 63.99 |
Mean single sequence MFE | -37.78 |
Consensus MFE | -11.13 |
Energy contribution | -14.26 |
Covariance contribution | 3.13 |
Combinations/Pair | 1.43 |
Mean z-score | -2.38 |
Structure conservation index | 0.29 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.787457 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4550517 93 + 23771897 GGUGGGCGGAUGAGAGC-AGU--GUGUGGGCGUGGCACAUAUGCAGGCACAC----------ACACACUUCCGCUUCCCUGGAGCUCCACAUCCGGACGCCAUAAU ((((..((((((.((((-.((--(((((.((.((.((....)))).)).)))----------))))...((((......))))))))..))))))..))))..... ( -43.70) >DroEre_CAF1 135466 103 + 1 GGUGGGCGGAUGAGUGC-AGU--GUGUGGGCGUGGCACAUAUACAGGCACAGGCACAGGCAUACACACUUCCGCUUCCAUGGAGCUCCACAUCCGGUCGCCAUAAU (((((.((((((((((.-(((--(((((.((.((((................)).)).)).))))))))..))))....(((....))))))))).)))))..... ( -41.79) >DroYak_CAF1 131477 101 + 1 GGUGGGCGGUUGAGCGC-AGUUUGUGUGGGCGUGGCACAUAUGCAGGCACACACA----CACACACACUUCCGCUUCCCUGGAGCUCCACAUCCGCUUGCCAUAAU ((..(((((.((((((.-(((.((((((.(.(((((.(.......))).))).).----)))))).)))..))))....(((....))))).)))))..))..... ( -41.00) >DroMoj_CAF1 181392 74 + 1 --AUGGCGA---------------AGGGAGAGCGGCAUGUGUGCAA--------------ACACACAUUUCCGUUG-CAUGCAGCGCCACAUCCGACGCUGAUAAU --..((((.---------------.(((...(.((((((((((...--------------.)))))))....((((-....))))))).).)))..))))...... ( -25.60) >DroAna_CAF1 129042 93 + 1 GGUGUGGUGUUGAAAUCAAGU--GGGUGGGCGUGGCAUGUGCAUGGGCGCACUU-----------CCGUCCCACAUCCAUGGAUCCCCACAUCCGUCCGCCAUAAU ..((((((((((....)))((--(((.((.(((((.(((((...(((((.....-----------.)))))))))))))))..))))))).......))))))).. ( -36.80) >consensus GGUGGGCGGAUGAGAGC_AGU__GUGUGGGCGUGGCACAUAUGCAGGCACAC________A_ACACACUUCCGCUUCCAUGGAGCUCCACAUCCGGCCGCCAUAAU (((((.(((.((...........(((((.((.((.........)).)).)))))..................((((.....))))....)).))).)))))..... (-11.13 = -14.26 + 3.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:36 2006