Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,544,105 – 4,544,195 |
Length | 90 |
Max. P | 0.668195 |
Location | 4,544,105 – 4,544,195 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 81.82 |
Mean single sequence MFE | -30.75 |
Consensus MFE | -20.11 |
Energy contribution | -21.00 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.08 |
Mean z-score | -1.86 |
Structure conservation index | 0.65 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.668195 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4544105 90 - 23771897 AGCCGUGAUAUAUUCACCCGGAUAUAUGUAUCUGUAUUGUGUGCAGUCAGCGGACUGUGCCCCAAGGGGUG-------GCAAAGGGGCACGGAUGUU ..((((.((((((((....))))))))....((((((...))))))...)))).(((((((((...(....-------.)...)))))))))..... ( -31.80) >DroSec_CAF1 121195 88 - 1 AGCCGUGAUAUAUUCCCCCGGAUAUAUGUAUCUGUAUUGUGUGCAGUCAGCGGACUGUGCCCCAAGGGG---------GGAAAGGGGAACGGAUGUU ..((((..(...((((((((((((....)))))...(((.(..(((((....)))))..)..))).)))---------))))...)..))))..... ( -33.30) >DroSim_CAF1 120925 88 - 1 AGCCGUGAUAUAUUCCCCCGGAUAUAUGUAUCUGUAUUGUGUGCAGUCAGCGGACUGUGCCCCAAGGGG---------GGAAAGGGGAACGGAUGUU ..((((..(...((((((((((((....)))))...(((.(..(((((....)))))..)..))).)))---------))))...)..))))..... ( -33.30) >DroEre_CAF1 127211 87 - 1 AGCCGUGAUAUAUUCCCCCGGAUAUAUGUAUCUGUAUUGUGUGCAGUCAGCGGUCUGUGCCCCAAGGGGAGAG----------GGGGGACGGAUGUU ..((((.......((((((((((...((...((((((...)))))).))...))))...(((....)))...)----------)))))))))..... ( -29.71) >DroYak_CAF1 124802 97 - 1 AGCCGUGAUAUAUUCCCCCGGAUAUAUGUAUCUGUAUUGUGUGCAGUCAGCGGACUGUGGCCCCAGGGGUGGGGGUAGGGAAAGGGGGACGGAUGCU ..(((........((((((...........(((((((((....))))..)))))((.((.(((((....))))).)).))...)))))))))..... ( -33.00) >DroAna_CAF1 121387 75 - 1 AGCCGUGAUAUAUUCCCCGGAAUAUAUGUAUCUGUAUUGUGUGCAGCCAACGGAGUGUAUCCCUUUGGGGAUG-----------GG----------- ..((((.((((((((....))))))))....((((((...))))))...))))....((((((....))))))-----------..----------- ( -23.40) >consensus AGCCGUGAUAUAUUCCCCCGGAUAUAUGUAUCUGUAUUGUGUGCAGUCAGCGGACUGUGCCCCAAGGGG_G_______GGAAAGGGGAACGGAUGUU ..((((.((((((((....))))))))....((((((...))))))...)))).((((.((((....................)))).))))..... (-20.11 = -21.00 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:35 2006