Locus 1554

Sequence ID 3L_DroMel_CAF1
Location 4,536,138 – 4,536,250
Length 112
Max. P 0.688614
window2412

overview

Window 2

Location 4,536,138 – 4,536,250
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 74.98
Mean single sequence MFE -23.98
Consensus MFE -8.88
Energy contribution -11.04
Covariance contribution 2.16
Combinations/Pair 1.12
Mean z-score -1.84
Structure conservation index 0.37
SVM decision value 0.32
SVM RNA-class probability 0.688614
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4536138 112 - 23771897
AGUUGAGAUUACACAAAGAGUUAUUAAUGAGUUAAUGGC--------AAAUAAUUUGUUGUUACUCAAUUGACUGCAAUAAUAACGAGGGAAUUACACAUUUAGGUUAUUGUGAAUGACC
...................(((((((.(((((.((..((--------((.....))))..))))))).(((....))))))))))..((..(((.((((..........)))))))..)) ( -21.20)
>DroSec_CAF1 113483 120 - 1
CGUUGAGAUUACACAAAGAGUUUAUAAUGAGUUAAUGGCAAGCGGCCAAAUAAUUUGUUGUUACUGAAUUGACUGCAAUAAUAACGAGGGAAUUAUAAAUUUAGGUUAUUUUGAAUGACC
((((.(((.((.((...(((((((((((.......((((.....)))).....((((((((((.((.........)).))))))))))...)))))))))))..)))).))).))))... ( -23.40)
>DroSim_CAF1 113130 120 - 1
AGUUGAGAAUACACAAAGAGUUUAUAAUGAGUUAAUGGCAAGCGGCCAAAUAAUUUGUUGUUACUGAAUUGACUGCAAUAAUAACGAGGAAAUUAUAAAUUUUGGUUAUUUUGAAUGACC
.(((.((((((..((..(((((((((((.......((((.....)))).....((((((((((.((.........)).))))))))))...)))))))))))))..)))))).))).... ( -24.70)
>DroEre_CAF1 119310 104 - 1
---------------AACAGUCAUUAAAGCGUCAAUGGCCAAAGGCCAAAUAAUUUGUUAUCACUGAACUGACUGCCAUAAUAACUAGGGAAUU-AAAAUUUCGAUGACUUUAUAUAACG
---------------...(((((((...((((((.(((((...)))))........(((.......))))))).))............(((((.-...)))))))))))).......... ( -19.70)
>DroYak_CAF1 116537 112 - 1
AGCUGGGAUUACAAAAACAGUCAUUAAAGAGUCAAUGGCCAAAGGCCAAAUAAUUUGUUAUUGCAGAAUUGACUGCAAUAAUAAUUA--------CAAAUUUCGAUGAUUUAAAAUGACG
...................((((((...((((((.(((((...)))))......((((((((((((......))))))))))))...--------..........))))))..)))))). ( -30.90)
>consensus
AGUUGAGAUUACACAAAGAGUUAUUAAUGAGUUAAUGGCAAAAGGCCAAAUAAUUUGUUGUUACUGAAUUGACUGCAAUAAUAACGAGGGAAUUACAAAUUUAGGUUAUUUUGAAUGACC
...................(((((((.((((((((((((.....))).(((((....))))).....))))))).)).)))))))................................... ( -8.88 = -11.04 +   2.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:29 2006