| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,530,736 – 4,530,829 |
| Length | 93 |
| Max. P | 0.971249 |
| Location | 4,530,736 – 4,530,829 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 78.73 |
| Mean single sequence MFE | -19.88 |
| Consensus MFE | -13.95 |
| Energy contribution | -15.07 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.971249 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4530736 93 + 23771897 CUUAUAAGGUUCAAUAAACUG--UAUU-----AUAUGUGUGCAUAUUCGUGUUGAACAAUACAAAUAAUCC-------UAUUGGUUAAGCUUGAUUGAGCUGCUAAG ........((((((((...((--(((.-----......)))))......))))))))..............-------..(((((..(((((....)))))))))). ( -17.60) >DroSec_CAF1 108413 94 + 1 CUUAUAAAGUUCAAUAAACUGCAUAUU-----AUAUGUAUGCAUAUUCGAGUUGAACAACAAAAAUAAUCC-------UAUUGGUUAAACUCGAUUGAGCUGCUA-G .......(((((((.....(((((((.-----....)))))))...(((((((....(((...((((....-------)))).))).))))))))))))))....-. ( -22.90) >DroSim_CAF1 107918 94 + 1 CUUAUAAAGUUCAAUAAACUGCAUAUU-----AUAUGUAUGCAUAAUCGAGUUGAACAAUAACAAUAAUUC-------UAUUGGUUAAACUCGAUUGAGCUGCUA-G .......(((((.......(((((((.-----....))))))).(((((((((...(((((..........-------)))))....))))))))))))))....-. ( -25.00) >DroEre_CAF1 114545 94 + 1 CUUGAAAAGUUCAGUAAGCUGCAUAAAAACAAACAC---UGCAUAUUCGAGUUGAACAAUACAAAUAA---------UUAUUGGCUUAACUUUACUGAGCUGCUA-G .......(((((((((...((((.............---)))).....(((((((.(((((.......---------.)))))..))))))))))))))))....-. ( -20.32) >DroYak_CAF1 111759 97 + 1 CUUGAAAAGUUCAAUAAACUGCAUAUU-----AUAC---U-CGUAUUCAAGUUAAACAAUACAAAUAAUCCUAUACAUUAUUGGUGAAACUUGAUUGAGCUGAUA-G ..((...((((.....)))).))((((-----(..(---(-((...(((((((..((......((((((.......)))))).))..))))))).)))).)))))-. ( -13.60) >consensus CUUAUAAAGUUCAAUAAACUGCAUAUU_____AUAUGU_UGCAUAUUCGAGUUGAACAAUACAAAUAAUCC_______UAUUGGUUAAACUUGAUUGAGCUGCUA_G .......(((((((.....(((((((..........)))))))...(((((((...(((((.................)))))....))))))))))))))...... (-13.95 = -15.07 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:28 2006