Locus 1552

Sequence ID 3L_DroMel_CAF1
Location 4,526,520 – 4,526,614
Length 94
Max. P 0.939586
window2410

overview

Window 0

Location 4,526,520 – 4,526,614
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 96.81
Mean single sequence MFE -24.48
Consensus MFE -24.60
Energy contribution -24.52
Covariance contribution -0.08
Combinations/Pair 1.07
Mean z-score -1.34
Structure conservation index 1.00
SVM decision value 1.30
SVM RNA-class probability 0.939586
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4526520 94 - 23771897
AAAGUACAUAGUUGCAUGUAUUCGUUAUUCAGGACACGGAUGGCGAAGUUUCCUGUUUUGCACAUAAAGUGCAGGGCAUUACUCAUAACCCCCG
..........((((...(((((((((((((.......))))))))))......((((((((((.....)))))))))).)))...))))..... ( -24.20)
>DroSec_CAF1 104096 94 - 1
AAAGUACAUAGUUGCAUGUAUUCGUUAUUCAGGACACGGAUGGCGAAGUUUCCUGUUUUGCACAUAAAGUGCAGGGCAUUACUCAUAACCCCCG
..........((((...(((((((((((((.......))))))))))......((((((((((.....)))))))))).)))...))))..... ( -24.20)
>DroSim_CAF1 103690 94 - 1
AAAGUACAUCGUUGCAUGUAUUCGUCAUUCAGGACACGGAUGGCGAAGUUUCCUGUUUUGCACAUAAAGUGCAGGGCAUUACUCAUAACCCCCG
..........((((...(((((((((((((.......))))))))))......((((((((((.....)))))))))).)))...))))..... ( -26.40)
>DroEre_CAF1 110297 94 - 1
AAAGUACAUAGUUGCAUGUAUUCGCUAUUCAGGACACGGAUGGCGAAGUUUCCUGUUUUGCACAUAAAGUGCAGGGCAUUACUCAUAACCCCCA
..........((((...(((((((((((((.......))))))))))......((((((((((.....)))))))))).)))...))))..... ( -26.70)
>DroYak_CAF1 106658 94 - 1
AAAGAACAUAGUUGCAUGUAUUCGUUAUUCAGGACAGGGAUGUCGAAGUUUCCUGUUUUGCACAUAAAGUGCAGGGCAUUACUCAUAACCCCCA
...(((.(((......))).)))........((...(((.(((.((.((....((((((((((.....))))))))))..))))))).))))). ( -20.90)
>consensus
AAAGUACAUAGUUGCAUGUAUUCGUUAUUCAGGACACGGAUGGCGAAGUUUCCUGUUUUGCACAUAAAGUGCAGGGCAUUACUCAUAACCCCCG
..........((((...(((((((((((((.......))))))))))......((((((((((.....)))))))))).)))...))))..... (-24.60 = -24.52 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:27 2006