Locus 1551

Sequence ID 3L_DroMel_CAF1
Location 4,524,663 – 4,524,754
Length 91
Max. P 0.902352
window2409

overview

Window 9

Location 4,524,663 – 4,524,754
Length 91
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 80.34
Mean single sequence MFE -29.03
Consensus MFE -14.60
Energy contribution -15.55
Covariance contribution 0.95
Combinations/Pair 1.14
Mean z-score -2.90
Structure conservation index 0.50
SVM decision value 1.02
SVM RNA-class probability 0.902352
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4524663 91 - 23771897
AGAGA--------GCGAGAGCUUCUCGCGGAAGCUGGCGC----AAUUAAAAAUCAGAGCUUC----GCCA-ACGAGCAUGUGAUUGAAAAUUUGAAGCGCCAAUGCA
.((((--------((....)).))))((....))((((((----((((...(((((.((((.(----(...-.))))).).)))))...))))....))))))..... ( -32.30)
>DroPse_CAF1 115680 91 - 1
AGGGA--------GUGAGAGCCUAGCACGGAAGCUGCUGUUAACCAGAAAAAAGCAAAGCUUUAGGUGCCA-GAGACCAUGUGAUAGAAAAUUA-UAGCGU-------
.((..--------((....))((.((((.((((((..((((...........)))).))))))..)))).)-)...)).((((((.....))))-))....------- ( -20.20)
>DroSec_CAF1 102294 91 - 1
AGAGA--------GCGAGAGCUUCUCGCGGAAGCUGGCGC----AAUUAAAAAUCAGAGCUUC----GCCA-ACGAGCAUGUGAUUGAAAUUUUAAAGCGCCAAUGCA
.((((--------((....)).))))((....))((((((----((((...(((((.((((.(----(...-.))))).).)))))..)))).....))))))..... ( -31.60)
>DroSim_CAF1 101901 91 - 1
AGAGA--------GCGAGAGCUUCUCGCGGAAGCUGGCGC----AAUUAAAAAUCAGAGCUUC----GCCA-ACGAGCAUGUGAUUGAAAAUUUAAAGCGCCAAUGCA
.((((--------((....)).))))((....))((((((----((((...(((((.((((.(----(...-.))))).).)))))...))))....))))))..... ( -32.30)
>DroEre_CAF1 108407 92 - 1
GGAAA--------GCGAGAGCUUCUCGCGGAAGCUGGCGC----AAUUAAAAAUCAGAGCUUC----CCCAAACGAGCAUGUGAUUGAAAACUUAAAGCGGCAAUGCA
(..((--------((....))))..)((....))((.(((----.......(((((.(((((.----.......)))).).)))))...........))).))..... ( -24.47)
>DroYak_CAF1 104654 99 - 1
AGAGAGCGAGAUAGCGAGAGCUUCUCGCGGAAGCUGUCGC----AAUUAAAAAUCAGAGCUUC----GCCA-ACGAGCAUGUGAUUGGAAAUUGAAAGCGCCAAAGCA
.....((((((.(((....)))))))))((..(((....(----((((...(((((.((((.(----(...-.))))).).)))))...)))))..))).))...... ( -33.30)
>consensus
AGAGA________GCGAGAGCUUCUCGCGGAAGCUGGCGC____AAUUAAAAAUCAGAGCUUC____GCCA_ACGAGCAUGUGAUUGAAAAUUUAAAGCGCCAAUGCA
.............(((((.....)))))....((((.(((...........(((((.(((((............)))).).)))))...........))).))..)). (-14.60 = -15.55 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:26 2006