Locus 1550

Sequence ID 3L_DroMel_CAF1
Location 4,523,833 – 4,523,928
Length 95
Max. P 0.667330
window2408

overview

Window 8

Location 4,523,833 – 4,523,928
Length 95
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 86.84
Mean single sequence MFE -26.05
Consensus MFE -17.03
Energy contribution -17.59
Covariance contribution 0.56
Combinations/Pair 1.21
Mean z-score -2.02
Structure conservation index 0.65
SVM decision value 0.28
SVM RNA-class probability 0.667330
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4523833 95 + 23771897
UCGAGGGGUUUUGUCUUUUACUUUUGCUUAUCAGCAUCCAUUGAACAGUAUCCUAUUGUUGUCAUUGUUGCUGCGGGGAGGGACACUUGCUCUCU
..(((((....(((((((..((.........(((((..((.(((((((((...))))))..))).)).))))).))..)))))))....))))). ( -23.50)
>DroSec_CAF1 101484 95 + 1
UCGAUGGGUUUUGCCUUUUCCUUUUUCUUAUCAGCAACCAUUGAACAGCAUCCUAUUGUUGUCAUUGUUGCUGCGGGGGCACACACUUGCUUUCU
..((.(((.....)))..))...........(((((((...(((.(((((......))))))))..))))))).(..((((......))))..). ( -27.10)
>DroSim_CAF1 101087 95 + 1
UCGAGGGGUUUUGCCUUUUCCUUUUUCUUAUCAGCAACCAUUGAACAGCAUCCUAUUGUUGUCAUUGUUGCUGCGGGGGCGGACACUUGCUUUCU
..((((((.....))))))............(((((((...(((.(((((......))))))))..))))))).(..(((((....)))))..). ( -28.50)
>DroEre_CAF1 107597 92 + 1
UCGAGCGUUUUUGUCUUUUCGGUUUUCUUAUCAGAAUCUAUUGAACAGCAUCCCAUUGUUGUGAUUGUUGCUGCAGGGGCGGACACUCGCUC---
..(((((..(((((((((.((((......(((....((....))((((((......)))))))))....)))).)))))))))....)))))--- ( -25.10)
>consensus
UCGAGGGGUUUUGCCUUUUCCUUUUUCUUAUCAGCAACCAUUGAACAGCAUCCUAUUGUUGUCAUUGUUGCUGCGGGGGCGGACACUUGCUCUCU
.((((....(((((((((.............(((((((...(((.(((((......))))))))..))))))).)))))))))..))))...... (-17.03 = -17.59 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:25 2006