Locus 155

Sequence ID 3L_DroMel_CAF1
Location 493,918 – 494,015
Length 97
Max. P 0.776642
window221 window222

overview

Window 1

Location 493,918 – 494,015
Length 97
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 86.56
Mean single sequence MFE -27.55
Consensus MFE -17.66
Energy contribution -18.23
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -2.27
Structure conservation index 0.64
SVM decision value 0.43
SVM RNA-class probability 0.732358
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 493918 97 + 23771897
AAUUU--UCACUCGGCCUGCAUGCAAAAUGGAAGUUCGCAUUCGCGACUGACUAACAGCCGAAAGGCAGUGGAAAAGGCGUUGAAAAAGUAGAAACAGA
..(((--(((..((.(((...(((....((..(((((((....))))...)))..))(((....))).)))....))))).))))))............ ( -25.70)
>DroSec_CAF1 74235 96 + 1
AAUGU--UCACUCGGCCUGCAUGCGA-AUGGAAGUUCGCAUUCGCGACUGACUAACAGCCGCAAGGCGGUUGAAAAGGCGGUGAAAAAGUAGAAACAGA
....(--(((((..((((((((((((-((....))))))))..)).......((((.(((....))).))))...)))))))))).............. ( -32.70)
>DroSim_CAF1 75572 97 + 1
AAUGU--UCACUCGGCCUGCAUGCGAAAUGGAAGUUCGCAUUCGCGACUGACUAACAGCCGCAAGGCGGUUGAAAAGGCGUUGAAAAAGUAGAAACAGA
(((((--(...((((((((((((((((.......)))))))..)))...........(((....)))))))))...))))))................. ( -27.30)
>DroYak_CAF1 78100 87 + 1
AAUUUUAUCACUCGGCCUGCAUGCAAAAUGGGAGUUCGCAAUUGCGAAUGGCUAACAGCCGA------------AAGGCGUUGAAAAAGUAGAAACAGA
.(((((.(((...((((..(((.....)))...((((((....))))))))))....(((..------------..)))..))).)))))......... ( -24.50)
>consensus
AAUGU__UCACUCGGCCUGCAUGCAAAAUGGAAGUUCGCAUUCGCGACUGACUAACAGCCGAAAGGCGGUUGAAAAGGCGUUGAAAAAGUAGAAACAGA
..............((((..........((..(((((((....))))...)))..))(((....)))........)))).................... (-17.66 = -18.23 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 493,918 – 494,015
Length 97
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 86.56
Mean single sequence MFE -24.50
Consensus MFE -18.10
Energy contribution -19.60
Covariance contribution 1.50
Combinations/Pair 1.04
Mean z-score -1.85
Structure conservation index 0.74
SVM decision value 0.54
SVM RNA-class probability 0.776642
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 493918 97 - 23771897
UCUGUUUCUACUUUUUCAACGCCUUUUCCACUGCCUUUCGGCUGUUAGUCAGUCGCGAAUGCGAACUUCCAUUUUGCAUGCAGGCCGAGUGA--AAAUU
............((((((..((((...............(((((.....)))))((..(((((((.......)))))))))))))....)))--))).. ( -21.70)
>DroSec_CAF1 74235 96 - 1
UCUGUUUCUACUUUUUCACCGCCUUUUCAACCGCCUUGCGGCUGUUAGUCAGUCGCGAAUGCGAACUUCCAU-UCGCAUGCAGGCCGAGUGA--ACAUU
..............((((((((((...........(((((((((.....)))))))))(((((((......)-))))))..))).)).))))--).... ( -30.50)
>DroSim_CAF1 75572 97 - 1
UCUGUUUCUACUUUUUCAACGCCUUUUCAACCGCCUUGCGGCUGUUAGUCAGUCGCGAAUGCGAACUUCCAUUUCGCAUGCAGGCCGAGUGA--ACAUU
.........................((((..(((((((((((((.....)))))))))(((((((.......)))))))...)).))..)))--).... ( -27.20)
>DroYak_CAF1 78100 87 - 1
UCUGUUUCUACUUUUUCAACGCCUU------------UCGGCUGUUAGCCAUUCGCAAUUGCGAACUCCCAUUUUGCAUGCAGGCCGAGUGAUAAAAUU
...........(((.(((..((((.------------..(((.....)))....(((..((((((.......)))))))))))))....))).)))... ( -18.60)
>consensus
UCUGUUUCUACUUUUUCAACGCCUUUUCAACCGCCUUGCGGCUGUUAGUCAGUCGCGAAUGCGAACUUCCAUUUCGCAUGCAGGCCGAGUGA__AAAUU
...............(((..((((...........(((((((((.....)))))))))(((((((.......)))))))..))))....)))....... (-18.10 = -19.60 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:01 2006