Locus 1548

Sequence ID 3L_DroMel_CAF1
Location 4,520,510 – 4,520,613
Length 103
Max. P 0.987232
window2405

overview

Window 5

Location 4,520,510 – 4,520,613
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 93.98
Mean single sequence MFE -27.54
Consensus MFE -22.18
Energy contribution -22.78
Covariance contribution 0.60
Combinations/Pair 1.07
Mean z-score -2.58
Structure conservation index 0.81
SVM decision value 2.07
SVM RNA-class probability 0.987232
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4520510 103 - 23771897
AAACAUAUUGCAAGCUCAGAGAGCUUCGACAUUUUGAUAAGUAGAAUGUCAGAGCAUUUGGAAGUCGACACUUUUAAGCUUAUAAUGGCGCUAACGCAAACAU
.......((((((((((...)))))).(((((((((.....)))))))))..(((..((((((((....))))))))(((......))))))...)))).... ( -27.60)
>DroSec_CAF1 98179 103 - 1
GAACAUAUUGCAAGCUCAGAGAGCUUCGAAAUUUUGAUAAGUAGCAUGUCAGAGCAUUUGGAAGUCGACACUUUCAAGCUUAUAAUGGAGCUAACGCAAACAU
.......((((.(((((...((((.......((((((((.......))))))))...((((((((....))))))))))))......)))))...)))).... ( -23.80)
>DroSim_CAF1 97788 103 - 1
GAACAUAUUGCAAGCUCAGAGAGCUUCGACAUUUUGAUAAGUAGCAUGUCAGAGCAUUUGGAAGUAGACACUUUCAAGCUUAUAAUGGAGCUAACGCAAACAU
.......((((.(((((.....(((..(((((.(((.....))).)))))..))).(((((((((....))))))))).........)))))...)))).... ( -27.50)
>DroEre_CAF1 104305 103 - 1
GAACAUAUUGCAAGCUCAGAGAGCUUCGACAUUUUGAUAAGUUGCAUGUCAGAGCAUUUGGAAGUUGAUACUUUCAAGCUUAUUAUGCAGCUUACGCAAACAU
.......((((((((((...))))))...........(((((((((((...((((..((((((((....))))))))))))..))))))))))).)))).... ( -33.60)
>DroYak_CAF1 100465 103 - 1
GAACAUAUUGCAAGCUUAGAGAGCUUCGACAUUUUAAUAAGUAGCAUGUCAGAGCAUUUGGAAGUCGACACUUUUAAGCUUAUCAUGCAGCUAACGCAAACAU
.......((((((((((...)))))).............(((.(((((...((((..((((((((....))))))))))))..))))).)))...)))).... ( -25.20)
>consensus
GAACAUAUUGCAAGCUCAGAGAGCUUCGACAUUUUGAUAAGUAGCAUGUCAGAGCAUUUGGAAGUCGACACUUUCAAGCUUAUAAUGGAGCUAACGCAAACAU
.......((((.(((((.....(((..(((((.(((.....))).)))))..))).(((((((((....))))))))).........)))))...)))).... (-22.18 = -22.78 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:22 2006