Locus 1547

Sequence ID 3L_DroMel_CAF1
Location 4,517,128 – 4,517,225
Length 97
Max. P 0.579218
window2404

overview

Window 4

Location 4,517,128 – 4,517,225
Length 97
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 80.78
Mean single sequence MFE -32.35
Consensus MFE -27.49
Energy contribution -28.60
Covariance contribution 1.11
Combinations/Pair 1.22
Mean z-score -1.18
Structure conservation index 0.85
SVM decision value 0.09
SVM RNA-class probability 0.579218
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4517128 97 - 23771897
----------UUUUUAUCGACUCACCCUUCAUGGCCCAUGGCUGUUUGCCGAGUAUGCCGCGCUGCAUUUGUCGCAGCUGCGCGUGGCACUUUUGGCUGACGCUGCU
----------......................((((...))))(((.((((((..((((((((.(((.(((...))).)))))))))))..)))))).)))...... ( -34.10)
>DroVir_CAF1 94374 106 - 1
-CAUAAAUUCGUUCGUCACACUCACCUUUCAUGGCCCAGGGCUGUUUGCUGAGUAUGCCGCGCUGCACCUGCCGCAGCUGCGACUGGCACACGGCGCUCGCAUUGCU
-....(((.((..((((..(((((.(....((((((...))))))..).))))).(((((((((((.......))))).))....))))...))))..)).)))... ( -30.80)
>DroSim_CAF1 94470 106 - 1
U-UUCUGCUUAUUUUAUCAACUCACCCUUCAUGGCCCAUGGCUGUUUGCCGAGUAUGCCGCGCUGCAUUUGUCGCAGCUGCGCGUGGCAUUUUCCGCUGACGCUGCU
.-....((........................((((...))))(((.((.(((.(((((((((.(((.(((...))).)))))))))))).))).)).))))).... ( -32.40)
>DroEre_CAF1 99270 106 - 1
A-AUCAGCUCAUUUACUCGACUCACCCUUCAUGGCCCAUGGCUGUUUGCCCAGUAUGCCGCGCUGCAUUUGUCGCAGCUGCGCGUGGCACUUUUGGCUGACACUGCU
.-...(((........................((((...))))(((.(((.((..((((((((.(((.(((...))).)))))))))))..)).))).)))...))) ( -32.20)
>DroYak_CAF1 96601 105 - 1
--UUCGGUUUUUUUAAUCGACUCACCCUUCAUGGCCCAUGGCUGUUUGCCGAGUAUGCCGCGCUGCAUUUGCCGCAGCUGCGCGUGGCACUUUUGGCUGACGCUGCU
--.((((((.....))))))............((((...))))(((.((((((..((((((((.(((.(((...))).)))))))))))..)))))).)))...... ( -38.10)
>DroAna_CAF1 100211 106 - 1
G-UUUAAAUCAUUAUCCAAACUUACCCUUCAUGGCCCAUGGCUGCUUGCCGAGUAUGCCACGCUGCACUUGCCGCAGCUGCGCGUGACACUUCUGGCUAACGCUGCU
.-..........................(((((((...(((((((((...))))).)))).(((((.......))))).)).))))).......(((....)))... ( -26.50)
>consensus
__UUCAGCUCAUUUUAUCGACUCACCCUUCAUGGCCCAUGGCUGUUUGCCGAGUAUGCCGCGCUGCAUUUGCCGCAGCUGCGCGUGGCACUUUUGGCUGACGCUGCU
................................((((...))))(((.((((((..((((((((.(((.(((...))).)))))))))))..)))))).)))...... (-27.49 = -28.60 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:21 2006