| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,505,323 – 4,505,419 |
| Length | 96 |
| Max. P | 0.736765 |
| Location | 4,505,323 – 4,505,419 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 81.28 |
| Mean single sequence MFE | -24.32 |
| Consensus MFE | -18.09 |
| Energy contribution | -17.90 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.736765 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4505323 96 - 23771897 AAGACGCAGCUUCAUUCUACAAAACAAUUGUGGAAAAGUGGAAAAUCCGCGCGCGUGUGUGUAUGUG--UGUGUCGGUC--------UGUGCGAAAACGAACAAUA ..(((((.......((((((((.....))))))))..((((.....))))(((((((....))))))--)))))).((.--------(((......))).)).... ( -26.90) >DroSec_CAF1 83316 97 - 1 -AGACGCAGCUUCAUUCUACAAAACAAUUGUGGAAAAGUGGAAAAUCCGCGUGUGUGUGUAUAUGUGUGUGUGUCGGUC--------UGUGCGAAAACGAACAAUA -.((((((((((..((((((((.....))))))))))))........((((((((....))))))))..)))))).((.--------(((......))).)).... ( -24.50) >DroSim_CAF1 82815 97 - 1 -AGACGCAGCUUCAUUCUACAAAACAAUUGUGGAAAAGUGGAAAAUCCGCGUGUGUGUGUAUAUGUGUGUGUGUCGGUC--------UGUGCGAAAACGAACAAUA -.((((((((((..((((((((.....))))))))))))........((((((((....))))))))..)))))).((.--------(((......))).)).... ( -24.50) >DroEre_CAF1 87245 82 - 1 AAGACGCAGCUUCAUUCUACAAAACAAUUGUGGAAAAGUGGAAAAUCCG------------UGUG----UGUGUCGGUC--------UGUGCGAAAACGAACAAUA ..((((((((((..((((((((.....))))))))))))((.....)).------------....----)))))).((.--------(((......))).)).... ( -20.20) >DroYak_CAF1 84441 102 - 1 AAGACGCAGCUUCAUUCUACAAAACAAUUGUGGAAAAGUGGAAAAUCCGCGUGUACGUGUGUGUG----UGUGUCGGUCGGUCGCUUUGUGUGAAAACGAACAAUA ..((((((((..((((((((((.....)))))))...((((.....))))......)))...)).----))))))(.(((.((((.....))))...))).).... ( -28.40) >DroAna_CAF1 87568 80 - 1 -ACGCGCAGCUUCAUUCUACAAAACAAUUGUGGAAAAGUGGGAAAC-UGCGAGA----GUGUA------UGUGCCAGU--------------GUAAACGAACAAUA -..((((((((((.((((((((.....))))))))..(..(....)-..)..))----).)).------)))))....--------------.............. ( -21.40) >consensus _AGACGCAGCUUCAUUCUACAAAACAAUUGUGGAAAAGUGGAAAAUCCGCGUGUGUGUGUGUAUG____UGUGUCGGUC________UGUGCGAAAACGAACAAUA ..((((((......((((((((.....))))))))..(((((...)))))...................))))))............................... (-18.09 = -17.90 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:20 2006