Locus 1545

Sequence ID 3L_DroMel_CAF1
Location 4,505,055 – 4,505,147
Length 92
Max. P 0.967632
window2402

overview

Window 2

Location 4,505,055 – 4,505,147
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 86.67
Mean single sequence MFE -36.52
Consensus MFE -29.94
Energy contribution -32.58
Covariance contribution 2.64
Combinations/Pair 1.19
Mean z-score -3.45
Structure conservation index 0.82
SVM decision value 1.61
SVM RNA-class probability 0.967632
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4505055 92 - 23771897
UUACUGUUGCUGUUGCUGGUGGCAUUGUUGUUGGCUGAGGCGAUAGUGGCAGCGGCAGCGGCAACAUUGAGCGAAACGCAGACGAAUGCAAC
(((.((((((((((((((.((.((((((((((......)))))))))).)).)))))))))))))).))).......(((......)))... ( -43.20)
>DroSec_CAF1 83048 92 - 1
UUACUGUUGCUGUUGCUGGUGGCAUUGUUGUUGGCUGAGGCGGUAGUGGCAGCGGCAGCGGCAACAUUGAGCGAAACGCAGACGAAUGCAAC
(((.((((((((((((((.((.(((((..(((......)))..))))).)).)))))))))))))).))).......(((......)))... ( -40.70)
>DroSim_CAF1 82544 92 - 1
UUACUGUUGCUGUUGCUGGUGGCAUUGUUGUUGGCUGAGGCGGUAGUGGCAGCGGCAGCGGCAACAUUGAGCGAAACGCAGACGAAUGCAAC
(((.((((((((((((((.((.(((((..(((......)))..))))).)).)))))))))))))).))).......(((......)))... ( -40.70)
>DroEre_CAF1 86983 86 - 1
UUACUGUUGCUGUUGCUGGUGGCAUUGUUGUUGGCUGAGGCGGUAGUGGCAG------CGGCAACAUUGAGUGAAACGCAGACGAAUGCAAC
.....(((((((((((((.((.(((((..(((......)))..))))).)).------))))))))....(((...)))........))))) ( -30.00)
>DroYak_CAF1 84163 92 - 1
UUACUGUUGCUGUUGCUGGUGGCAUUGUUGUUGGCUGAGGCGGUAGUGGCAGCGGCAGCGGCAACAUUGAGUGAAACGCAGACGAAUGCAAC
(((.((((((((((((((.((.(((((..(((......)))..))))).)).)))))))))))))).))).......(((......)))... ( -40.70)
>DroPer_CAF1 96223 80 - 1
UU------GUUGUUUUUGGUGGCAUUGUUGGUGGCAGC------AGCAGCAACAUCGACGACGACAGUAAGUGAAACGCAGACGAAUGCAAC
((------((((((.((((((...((((((.((....)------).)))))))))))).))))))))..........(((......)))... ( -23.80)
>consensus
UUACUGUUGCUGUUGCUGGUGGCAUUGUUGUUGGCUGAGGCGGUAGUGGCAGCGGCAGCGGCAACAUUGAGCGAAACGCAGACGAAUGCAAC
(((.((((((((((((((.((.((((((((((......)))))))))).)).)))))))))))))).))).......(((......)))... (-29.94 = -32.58 +   2.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:19 2006