Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,502,696 – 4,502,788 |
Length | 92 |
Max. P | 0.977991 |
Location | 4,502,696 – 4,502,788 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 77.40 |
Mean single sequence MFE | -16.62 |
Consensus MFE | -9.57 |
Energy contribution | -11.05 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.26 |
Mean z-score | -2.56 |
Structure conservation index | 0.58 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.977991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4502696 92 - 23771897 AUGUAAGAUUCUCUGCGGGGCAAACGUUGAAUAAA-UAUCAACAAGGUAGAGAACUGAAAUAACUAACAUAA-GGAAUGUGGAGUGAGAAUUAA .....((.((((((((.(......)(((((.....-..)))))...))))))))))......(((.((((..-...))))..)))......... ( -17.40) >DroSec_CAF1 80686 93 - 1 AUGUAAGGUUUUCUGCGGGGAAAACGUUGAAUAAA-UAUCAACAAGGCAGAGAACUGAAAUAACAAAUAUUAUAAAAUGUGGAGUGAGAAUUAA ......((((((((((.(......)(((((.....-..)))))...)))))))))).......((.(((((....)))))....))........ ( -17.90) >DroSim_CAF1 80203 93 - 1 AUGUAAGGUUUUCUGCGGGGAAAACGUUGAAUAAA-UAUCAACAAGGCAGAGAACUGAAAUAACAAAUAUUAUAAAAUGUGGAGUGAGAAUUAA ......((((((((((.(......)(((((.....-..)))))...)))))))))).......((.(((((....)))))....))........ ( -17.90) >DroEre_CAF1 84564 91 - 1 AUGUAAGGUUUUCUGCGG-GAAAACGUUGAAUAAA-AGUCAACAAGGUAGAGAACUAACAUAAAAAAUAUUA-AAAACGUGGAGUGAGAAAUUA ((((..(((((((((((.-.....)(((((.....-..)))))...)))))))))).))))...........-..................... ( -16.90) >DroYak_CAF1 81724 92 - 1 AUGUAAGGUUUUCUGCGGGGAAAACGUUGAAUAAA-AAUCAACAAGGUAGAGAACUAAAAUAACAAACAUUG-AAAAUGUGAAGUGUGAGUUAA ......((((((((((.(......)(((((.....-..)))))...))))))))))....((((..(((((.-.........)))))..)))). ( -20.60) >DroAna_CAF1 84516 78 - 1 AUGUAAAGUUUUCAACUGGGAA---GCUGACUGAAAUGGCAA------------CUAAGGCAACAAAUAAAC-AAUGGGUAAACGGAGAAUAAA ......(((((((.....))))---)))..(((....(....------------)...(....)........-..........)))........ ( -9.00) >consensus AUGUAAGGUUUUCUGCGGGGAAAACGUUGAAUAAA_UAUCAACAAGGUAGAGAACUAAAAUAACAAAUAUUA_AAAAUGUGGAGUGAGAAUUAA .(((..(((((((((((.......)(((((........)))))...))))))))))...)))................................ ( -9.57 = -11.05 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:18 2006