Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,483,382 – 4,483,484 |
Length | 102 |
Max. P | 0.829624 |
Location | 4,483,382 – 4,483,484 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 79.43 |
Mean single sequence MFE | -39.80 |
Consensus MFE | -25.78 |
Energy contribution | -26.82 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.30 |
Mean z-score | -1.82 |
Structure conservation index | 0.65 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829624 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4483382 102 + 23771897 AAGAUGGUGGUGAGGCUGUUGGUGGUGCGCCUGG---UGGUGCGAU------GGCACCUGCUUGAUGGGCAUGGGCGGCAUGGGCAGAGGAGGCGCUGGAGAGGCCAGCAC ..............(((.(((.(.((((((((..---.(((((...------.)))))((((.....)))).)))).)))).).)))....)))(((((.....))))).. ( -38.50) >DroSec_CAF1 61023 102 + 1 AAGAUGGUGGUGCUGCUGUUGGUGUUGCGACUGG---UGGUGCGAU------GGCACCUGCUUGAUGGGCAUGGGCGGCAUGGGCAGGGGCAGCGCUGGAGAGGCCGGAAC .....((((.((((.(((((.(((((((......---.(((((...------.)))))((((.....))))...))))))).))))).)))).))))((.....))..... ( -43.70) >DroSim_CAF1 58927 102 + 1 AAGAUGGUGGUGCUGCUGUUGGUGGUGCGACUGG---UGGUGCGAU------GGCACCUGCUUGAUGGGCAUGGGCGGCAUGGGCAGGGGCAGCGCUGGAGAGGCCGGAAC ....(((((((((((((.(((.(.((((..((.(---((((((...------.))))).(((.....))))).))..)))).).))).)))))))))......)))).... ( -42.20) >DroEre_CAF1 64414 102 + 1 AAGAUGGUAGUGCGGCUGUUGGUGGUGCGACUGA---UGGUGCGAU------GGCACCUGCUUGAUGGGCAUGGGCGGCAUGGGCAGGGGCAGCAGUGGAGAGGCCGGAAC ............(((((.(((.((.(((..(((.---(.((((...------.((.((((((.....)))).)))).)))).).)))..))).)).)))...))))).... ( -35.10) >DroYak_CAF1 63014 102 + 1 AUGAUGGUAGUGCGGCUGUUGGUGAUGCGACUGA---UGGUGCGAU------GGCACCUGCUUGAUGGGCAUGGGCGGUAUGGGCAGGGGCUGCACUGGAGAGGCCGGAAC ....(((((((((((((.(((.(.((((..((.(---((((((...------.))))).(((.....))))).))..)))).).))).)))))))))......)))).... ( -39.30) >DroPer_CAF1 73613 96 + 1 GCUGAGAUGUCGCAGCUGUUGAGGAUGCAGCAGGGAAUGCUGCGGCGGCUGCGGCGGCUGCUUGAUGGGCAUGGGUGGCAUGA---UGGG---CACUGGAGC--------- (((.(..((((((((((((......(((((((.....)))))))))))))))))))((..(((.........)))..))....---).))---)........--------- ( -40.00) >consensus AAGAUGGUGGUGCGGCUGUUGGUGGUGCGACUGG___UGGUGCGAU______GGCACCUGCUUGAUGGGCAUGGGCGGCAUGGGCAGGGGCAGCACUGGAGAGGCCGGAAC .....((((.(((..(((((.(((.(((..........(((((..........)))))((((.....))))...))).))).)))))..))).)))).............. (-25.78 = -26.82 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:17 2006