Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,463,354 – 4,463,454 |
Length | 100 |
Max. P | 0.752315 |
Location | 4,463,354 – 4,463,454 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 91.30 |
Mean single sequence MFE | -30.70 |
Consensus MFE | -22.26 |
Energy contribution | -21.83 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.14 |
Mean z-score | -2.37 |
Structure conservation index | 0.73 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4463354 100 + 23771897 GCCACUAAGUAUUAACGAAAUAUACUUAAAAUAUUAAGUGGCCGUUUGGAUGAUUUGGCGGUUAGGCCGGGGGUGAAAGGGGGACUCCCAAAUC---GUGGCU (((((..........((((...(((((((....)))))))....))))...((((((((......)))((((((.........)))))))))))---))))). ( -31.90) >DroSec_CAF1 40899 100 + 1 GCCACUAAGUAUUAACGAAAUAUAUUAAAAAUAUUAAGUGGCCGUUUGGAUGAUUUGGAGGUUAGGCCGGGGGAGAAAGGGGGACCCCCAAAUC---GUGGCU ((((((.((((((................)))))).)))))).......(((((((((.((((...((..........))..)))).)))))))---)).... ( -28.69) >DroEre_CAF1 44584 100 + 1 GCCACUAAGAAUUAAUGAAAUAUACUAAAAAUAUUAAGUGGCCGUUUGGCUGCUUUGGAGGUUAGGACGGGGGAGAAAGGGGGACUCCCAAAUC---GUGGCU (((((...................((((.......(((..(((....)))..)))......))))((...(((((.........)))))...))---))))). ( -30.22) >DroYak_CAF1 42773 103 + 1 GCCACUAAGUAUUAAUGAAAUAUAUUAAAAGUAUUAAGUGGCCGUUUGGCUGUUUAGGUGGUUAGGCCGGGGGAGAAAGGGGGACCCCCAAAUCGUCGUGGCU ((((((..(((((.....)))))...........((((..(((....)))..))))))))))..(((((.((..((...(((....)))...)).)).))))) ( -32.00) >consensus GCCACUAAGUAUUAACGAAAUAUACUAAAAAUAUUAAGUGGCCGUUUGGAUGAUUUGGAGGUUAGGCCGGGGGAGAAAGGGGGACCCCCAAAUC___GUGGCU (((((.........((..(((((.......)))))..))((((.....................))))(((((...........)))))........))))). (-22.26 = -21.83 + -0.44)
Location | 4,463,354 – 4,463,454 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 91.30 |
Mean single sequence MFE | -24.68 |
Consensus MFE | -17.50 |
Energy contribution | -18.25 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -3.24 |
Structure conservation index | 0.71 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.752315 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4463354 100 - 23771897 AGCCAC---GAUUUGGGAGUCCCCCUUUCACCCCCGGCCUAACCGCCAAAUCAUCCAAACGGCCACUUAAUAUUUUAAGUAUAUUUCGUUAAUACUUAGUGGC .(((((---((((((((((.......))).....(((.....)))))))))).....(((((..((((((....)))))).....)))))........))))) ( -25.20) >DroSec_CAF1 40899 100 - 1 AGCCAC---GAUUUGGGGGUCCCCCUUUCUCCCCCGGCCUAACCUCCAAAUCAUCCAAACGGCCACUUAAUAUUUUUAAUAUAUUUCGUUAAUACUUAGUGGC .(((((---(((((((((((...((..........))....))))))))))).....(((((......(((((.......))))))))))........))))) ( -26.50) >DroEre_CAF1 44584 100 - 1 AGCCAC---GAUUUGGGAGUCCCCCUUUCUCCCCCGUCCUAACCUCCAAAGCAGCCAAACGGCCACUUAAUAUUUUUAGUAUAUUUCAUUAAUUCUUAGUGGC .(((((---(((..(((((.........)))))..)))((((......(((..(((....)))..))).......))))...................))))) ( -22.62) >DroYak_CAF1 42773 103 - 1 AGCCACGACGAUUUGGGGGUCCCCCUUUCUCCCCCGGCCUAACCACCUAAACAGCCAAACGGCCACUUAAUACUUUUAAUAUAUUUCAUUAAUACUUAGUGGC .(((((........(((((...........)))))((((.....................))))..................................))))) ( -24.40) >consensus AGCCAC___GAUUUGGGAGUCCCCCUUUCUCCCCCGGCCUAACCUCCAAAUCAGCCAAACGGCCACUUAAUAUUUUUAAUAUAUUUCAUUAAUACUUAGUGGC .(((((........(((((...........)))))((((.....................))))..................................))))) (-17.50 = -18.25 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:16 2006