Locus 1539

Sequence ID 3L_DroMel_CAF1
Location 4,453,987 – 4,454,101
Length 114
Max. P 0.568774
window2391

overview

Window 1

Location 4,453,987 – 4,454,101
Length 114
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 86.15
Mean single sequence MFE -40.77
Consensus MFE -31.12
Energy contribution -32.27
Covariance contribution 1.14
Combinations/Pair 1.20
Mean z-score -2.21
Structure conservation index 0.76
SVM decision value 0.07
SVM RNA-class probability 0.568774
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4453987 114 - 23771897
GUCAUCUUCGUGAUCCCUGGAG------UGAUGAUGCCGCUGGUGCUUGUGGUGUUUCACAUGGGAAACGUCCGCCAGACAUGCGAUUGCCAUAAGGCAUAGAACCAGGAUCACGAGGAC
....((((((((((((.(((..------.........(((((...((.((((((((((......)))))).)))).)).)).)))..((((....)))).....))))))))))))))). ( -47.20)
>DroSec_CAF1 31224 114 - 1
GUCAUCUUCGUGAUCCCUGGUG------UGAUGAUGCCGCUGGUGCUUGAGGUGUUUCACAUGAGAAACGUCCGCCAGACAUGCGAUUGCCAUAAGGCAUAAAAUCAGGAUCACAAGGAC
....((((.(((((((.((((.------.....((((((((((((...((.((.((((....)))).)).)))))))).)..((....)).....)))))...))))))))))).)))). ( -39.10)
>DroSim_CAF1 31165 114 - 1
GUCAUCUUCGUGGUCCCUGGUG------UGAUGAUGCCGCUGGUGCUUGUGGUGUUUCACAUGGGAAACGUCCGCCAGACAUGCGAUUGCCAUAAGGCAUAAAACCAGGAUCACAAGGAC
....((((.(((((((.((((.------.....(((((((....))((((((((..((.(((.(....)(((.....)))))).)).)))))))))))))...))))))))))).)))). ( -42.50)
>DroEre_CAF1 34102 114 - 1
GUCGUAUUCGUGUUCCCUGGGC------UGAUGAUGCCUCUGGUGCUUGUGGUGUUUCACAUGGGAAACUUCCGCCAGACAUGCGGUUGCCAUAAGGCAUAAAACCAGGAUCACAAGGAU
.........(((...(((((((------((...(((..(((((((..(((((....))))).((....))..)))))))))).))))((((....)))).....)))))..)))...... ( -36.60)
>DroYak_CAF1 32761 114 - 1
GUCAUCUUCAUGAUCCCUGGAG------UGAUGAUGCCGCUGGUGCUUGUGGUGUUUCACAUGGGAAACAUCCGCCAGACAUCCGAUUGCCAUAAGGCAUAAAACCAGGAUCACAAGGAU
...(((((..((((((.(((..------....((((...((((((.....((((((((......)))))))))))))).))))....((((....)))).....)))))))))..))))) ( -40.50)
>DroAna_CAF1 33750 120 - 1
CUCAUUAUCGUAUUCCUUGGAGGAGUGAUGAUGAUGCCGCUGGUGCUUGUGAUGUUUCACAUGCGAAACAUCCGCCCAACAGGCAACCGCCAAAAGGCUCAACAACAGGACAAUAAAGAG
..((((((((((((((.....))))).)))))))))((...(((((((((((((((((......))))))))......)))))).)))(((....))).........))........... ( -38.70)
>consensus
GUCAUCUUCGUGAUCCCUGGAG______UGAUGAUGCCGCUGGUGCUUGUGGUGUUUCACAUGGGAAACGUCCGCCAGACAUGCGAUUGCCAUAAGGCAUAAAACCAGGAUCACAAGGAC
....((((.(((((((.(((..............(((..((((((.....((((((((......))))))))))))))....)))..((((....)))).....)))))))))).)))). (-31.12 = -32.27 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:09 2006