| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,450,659 – 4,450,763 |
| Length | 104 |
| Max. P | 0.634571 |
| Location | 4,450,659 – 4,450,763 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 80.83 |
| Mean single sequence MFE | -24.62 |
| Consensus MFE | -17.38 |
| Energy contribution | -18.85 |
| Covariance contribution | 1.47 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.634571 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4450659 104 - 23771897 --AUAGUAUAUCUAAUAACAUUCAGCUGGUAUAUCU-UUUGCAUAUGUAUCGGUAUUGUCAUUCUGAUUGCAGUCGUCUGGCGAAAUGCGGUUACGACUGCGAACCA --........((.(((.(((....((((((((((..-.......))))))))))..))).)))..))((((((((((..(.((.....)).).)))))))))).... ( -25.30) >DroSec_CAF1 27931 104 - 1 --AUAGUAUAUCUAAUAACAUUCAGCUGGUAUAUCU-UUUGCAUAUGUAUCGGUAUUGUCUUUCUGAUUGCAGUCGUCUGGCGAAAUGCGGCUGCGACUGCGAACCA --...................((((..((.(((((.-..(((....)))..)))))...))..))))((((((((((..(.((.....)).).)))))))))).... ( -27.10) >DroSim_CAF1 27221 104 - 1 --AUAGUAUAUCUAAUAACAUUCAGCUGGUAUAUCU-UUUGCAUAUGUAUCGGUAUUGUCUUUCUGAUUGCAGUCGUCUGGCGAAAUGCGGUUGCGACUGCGAACCA --...................((((..((.(((((.-..(((....)))..)))))...))..))))((((((((((..(.((.....)).).)))))))))).... ( -25.30) >DroEre_CAF1 30697 104 - 1 --AUAGUAUAUCUAAUACAAUUCAGCUGGUAUAUCU-UUUGCAUAUGUAUCGGUAUUAUCUUUCUAAUUGCAGUCGUCUGGCCAAAUGCGGUUGCGACUGCGAACCA --...((((.....))))......((((((((((..-.......)))))))))).............((((((((((..((((......)))))))))))))).... ( -28.20) >DroYak_CAF1 29016 103 - 1 --AUAGUAUAUCUAAUAAAAUUCAGCUGCUAU-UUU-UUUGCAUCUGUAUCGAUAUUGUCUUUUUGAUUGCAGUCGUCUGGCGAAAUGCGGUUGCGACUGCGAACCA --..........(((((.....(((.(((...-...-...))).)))......))))).........((((((((((..(.((.....)).).)))))))))).... ( -22.30) >DroAna_CAF1 29800 93 - 1 AUAUACUAUAUUCGAUAAUAAUAAUAAGAUCUGUGUAUUUGCAUACAAAA--------------AGAUUGCAAGAGUCUGGCGAAAUGCGAUUACCAGAGCGGGUAA ........((((((...............((((.(((.((((((......--------------(((((.....)))))......)))))).))))))).)))))). ( -19.49) >consensus __AUAGUAUAUCUAAUAACAUUCAGCUGGUAUAUCU_UUUGCAUAUGUAUCGGUAUUGUCUUUCUGAUUGCAGUCGUCUGGCGAAAUGCGGUUGCGACUGCGAACCA ........................((((((((((..........)))))))))).............((((((((((.(.((.....)).)..)))))))))).... (-17.38 = -18.85 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:07 2006