Locus 1537

Sequence ID 3L_DroMel_CAF1
Location 4,450,268 – 4,450,358
Length 90
Max. P 0.924092
window2389

overview

Window 9

Location 4,450,268 – 4,450,358
Length 90
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 83.92
Mean single sequence MFE -22.37
Consensus MFE -16.19
Energy contribution -15.87
Covariance contribution -0.33
Combinations/Pair 1.17
Mean z-score -2.62
Structure conservation index 0.72
SVM decision value 1.16
SVM RNA-class probability 0.924092
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4450268 90 - 23771897
CGUAU-------------UCCCAUACCGGUUCAGUGCCC-GAGUAAUGGGUACGAACUAAAUUUUUAUUAUUAUUGUUAUUGCUGACCUAAACAAAAUACUAUU
.((((-------------(........(((((.((((((-(.....))))))))))))...............(((((............)))))))))).... ( -17.40)
>DroSec_CAF1 27544 103 - 1
CGUAUAUUAUAUACUCUGUCCCAUACCGGUUCAGUGCCCUGAGUAAUGGGUAUGAACCUAAUAUUUAUUAUCAUUCUUAU-GGUGACCUAAACAAAAUAACAUU
.(((((...)))))...((((((((..((((((.(((((........)))))))))))((((....)))).......)))-)).)))................. ( -24.10)
>DroSim_CAF1 26834 103 - 1
CGUAUAUUAUAUACUCUGUCCCAUACCGGUUCAGUGCCCUGAGUAAUGGGUACGAACCUAAUAUUUAUUAUCAUUCAUAU-GGUGACCUAAACAAAAUACCAUU
.(((((...)))))...((((((((..(((((.((((((........)))))))))))((((....)))).......)))-)).)))................. ( -25.60)
>consensus
CGUAUAUUAUAUACUCUGUCCCAUACCGGUUCAGUGCCCUGAGUAAUGGGUACGAACCUAAUAUUUAUUAUCAUUCUUAU_GGUGACCUAAACAAAAUACCAUU
.((........................(((((.((((((........)))))))))))............(((((......))))).....))........... (-16.19 = -15.87 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:06 2006