| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,449,156 – 4,449,251 |
| Length | 95 |
| Max. P | 0.606028 |
| Location | 4,449,156 – 4,449,251 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 79.57 |
| Mean single sequence MFE | -23.85 |
| Consensus MFE | -14.21 |
| Energy contribution | -13.93 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.606028 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4449156 95 - 23771897 AGAGCUAAUUUUUUAUAUUAGCGGGUAGAUGAUGG--UCUGAGAACUCAUUUAAAUGCCGGAAACUUUGAUCCGCUCGGGUCAGAUCACACACAUCA ...((((((.......)))))).......((((((--(.(((.................(....)((((((((....))))))))))).)).))))) ( -24.10) >DroSec_CAF1 26414 86 - 1 AGAGCUGAUUUUUCAUAUUAGCUG---------AG--UCUGAGAACUAAUUUAAAUGCCGGAAACUUUGAUCCGCUCGGGUCGGAUCACACACAUCA ..(((((((.......)))))))(---------((--(.((..................(....)..((((((((....).))))))))).)).)). ( -19.50) >DroSim_CAF1 25702 95 - 1 AGAGCUAAUUUUUCAUAUUAGCGGGUAGAUGAUAG--CCUGAGAACUCAUUUUAAUGCCGGAAACUUUGAUCCGCUCGGGUCAGAUCACACACAUCA .((((((((.......))))))..((.(.((((.(--((((((....(((....))).((((........)))))))))))...)))))))...)). ( -21.50) >DroEre_CAF1 29208 95 - 1 AGAGCUAAUUUUUUAUAUUAGCGGGUAGAUCAUGG--UAUGAGAACUCAUUUAAAUGCCGGAAACUUUGAUCCGCUCGGGUCAAAACACACACAUCG .((((((((.......))))))(((..(((((.((--(((..(((....)))..)))))(....)..)))))..))).................)). ( -23.00) >DroYak_CAF1 27573 97 - 1 AGAGCUAAUUUUUCAUAUUAGCGUGUAGAUUAGCGUGUGUGAGAACUCAUUUAAACGCCGGAAACUUUGAUCCGCUCGGGUCAAAACACACAUAUCA .((((((((((..(((......))).))))))))(((((((..................(....)((((((((....)))))))).))))))).)). ( -29.50) >DroAna_CAF1 28079 88 - 1 AGAGCUAAUCUUUAAUAUUAGC---UACAUGAUGG--CCUGAGAACUGAGGCGAGUGCCGGAAACUUUGAAGUGA----GUUAGGUAGAUCAGGUCA ..(((((((.......))))))---)......(((--(((((..(((..(((....)))...(((((......))----))).)))...)))))))) ( -25.50) >consensus AGAGCUAAUUUUUCAUAUUAGCGGGUAGAUGAUGG__UCUGAGAACUCAUUUAAAUGCCGGAAACUUUGAUCCGCUCGGGUCAGAUCACACACAUCA ...((((((.......))))))....................((...............(....)((((((((....)))))))).........)). (-14.21 = -13.93 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:05 2006