| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,448,661 – 4,448,758 |
| Length | 97 |
| Max. P | 0.671452 |
| Location | 4,448,661 – 4,448,758 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 80.35 |
| Mean single sequence MFE | -13.77 |
| Consensus MFE | -8.52 |
| Energy contribution | -8.86 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.671452 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4448661 97 + 23771897 GUCAUUUGAAUUCCUACCAUC-AAACUUGAUUGUUAUACAAUCGAUUUGAAUUUUAAUGAAGUCCAUUUA---UUUUUGCAAUAAUCGCAAACAAAUCUUU-- .(((((.((((........((-(((.(((((((.....)))))))))))))))).)))))..........---..(((((.......))))).........-- ( -15.10) >DroSec_CAF1 25918 97 + 1 GUCAUUUGAAUACCUACCAUC-AAACUUGAUUGUUAUACAAUCGAUUUGAAUUUUAAUGAAGUCCAUUUA---UUUUUGCCAUAAUCGCACACAAAUCUUU-- .(((((.((((........((-(((.(((((((.....)))))))))))))))).)))))..........---....(((.......)))...........-- ( -12.70) >DroSim_CAF1 25224 97 + 1 GUCAUUUGAAUUCCUACCAUC-AAACUUGAUUGUUAUACAAUCGAUUUGAAUUUUAAUGAAGUCCAUUUA---UUUUUGCCAUAAUCGCACACAAAUCUUU-- .(((((.((((........((-(((.(((((((.....)))))))))))))))).)))))..........---....(((.......)))...........-- ( -12.70) >DroEre_CAF1 28732 88 + 1 GUCAUUUGAAUUCCUACCGUC-AAACUUGAUUGUUAUACAAUCGAUUAGAAUUUUAAUGAAAUCCAUUUA---UUUUUGCCAUAAUCUCACA----------- .(((((.((((((.....(..-...)(((((((.....)))))))...)))))).)))))..........---...................----------- ( -11.80) >DroYak_CAF1 27104 78 + 1 UCCGUUUGAAUUCCUACGAUC-AAACUUGAUUGUUAUACAAUCGAUUUGAAUUUUAAUGGAAUCCAUUUA---UUUUUGCCA--------------------- ((((((.((((........((-(((.(((((((.....)))))))))))))))).)))))).........---.........--------------------- ( -14.70) >DroAna_CAF1 27540 103 + 1 AUCAUUUGAAUUCCUUGCUCCAAAACUCGAUUGUUAUACAAUCGAGCUCAAUCUUAAUUUAAUCAAUUUGAAUUUGUUGCCAUAAUCGCCCACAAAUCUUUCU ...(((((.................((((((((.....))))))))..((((...(((((((.....))))))).)))).............)))))...... ( -15.60) >consensus GUCAUUUGAAUUCCUACCAUC_AAACUUGAUUGUUAUACAAUCGAUUUGAAUUUUAAUGAAAUCCAUUUA___UUUUUGCCAUAAUCGCACACAAAUCUUU__ .(((((.((((((.............(((((((.....)))))))...)))))).)))))........................................... ( -8.52 = -8.86 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:04 2006