Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,443,266 – 4,443,381 |
Length | 115 |
Max. P | 0.506839 |
Location | 4,443,266 – 4,443,381 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 86.05 |
Mean single sequence MFE | -28.90 |
Consensus MFE | -18.15 |
Energy contribution | -18.55 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.08 |
Mean z-score | -2.02 |
Structure conservation index | 0.63 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4443266 115 + 23771897 UUAAAUAAUGUCUGGAUUAUUUAGAACUCUCUAUUGAUUGGAGACCAGCCGCCUUAAGUUGACUAAUUAGUUGGAUUAGCGUCUUCGGCUACGAUUGUAUAAACAAACAGACGAU ........((((((.............((((((.....))))))..(((((......(((((((((....)))).))))).....)))))....((((....)))).)))))).. ( -26.40) >DroSec_CAF1 20463 109 + 1 UUAAAUAAUGUCUGGGUUAUUGAGAACUCUCCAUUGAUUGGAGACCAGCCGCCUUAAGUCGACUAAUUAGUUGGAUUAGCGUCUUC------GAUUGUAUAAACAAAAAGACGAU .........(.(((((((......)))((((((.....)))))))))).)...((((..(((((....)))))..))))((((((.------..((((....)))).)))))).. ( -25.60) >DroSim_CAF1 19838 109 + 1 UUAGAUAAUGUCUGGGUUAUUGAGAACUCUCCAUUGAUUGGAGACCAGCCGCAUUAAGUCGCCUAAUUAGUUGGAUUAGCGUCUUC------GAUUGUAUAAACAAACAGACGAU .....(((((((((((((......)))((((((.....))))))))))..))))))((.(((.(((((.....)))))))).))((------(.((((........)))).))). ( -27.50) >DroEre_CAF1 23678 111 + 1 UUAAAUAAUGUCUGGGCUAUUGGGAACCAUCCAUUGAUUGGAGACCAGC----UGAAAUCAACUAAUUAGUUGGAUUAGCGUCUGCGAUCACGAUUGUUUAAACAAACAGACGAU ........((((((.....(((.((((.(((...((((((.((((..((----(((..((((((....)))))).))))))))).)))))).))).))))...))).)))))).. ( -33.20) >DroYak_CAF1 21614 111 + 1 UUAAAUAAUGUCUGGGCUACUGAGAACUCUCCACUGAUUGGAGACCAGC----UAAAAUCAACUAAUUAGUUGGAUUAGCGUCUUCAGCCGAGAUUGCAUAAACAAACAGACGAU ........((((((((((...((((..((((((.....))))))...((----(((..((((((....)))))).))))).)))).))))....(((......))).)))))).. ( -31.80) >consensus UUAAAUAAUGUCUGGGUUAUUGAGAACUCUCCAUUGAUUGGAGACCAGCCGC_UUAAGUCGACUAAUUAGUUGGAUUAGCGUCUUC______GAUUGUAUAAACAAACAGACGAU ........((((((.((((........((((((.....))))))(((((....................)))))..))))..............(((......))).)))))).. (-18.15 = -18.55 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:03 2006