Locus 1533

Sequence ID 3L_DroMel_CAF1
Location 4,429,708 – 4,429,818
Length 110
Max. P 0.651254
window2385

overview

Window 5

Location 4,429,708 – 4,429,818
Length 110
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 84.94
Mean single sequence MFE -24.54
Consensus MFE -17.41
Energy contribution -18.41
Covariance contribution 1.00
Combinations/Pair 1.14
Mean z-score -1.79
Structure conservation index 0.71
SVM decision value 0.25
SVM RNA-class probability 0.651254
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4429708 110 + 23771897
ACAUAGUCAUUCAAGCAAAGAACUAGGUAGCAGAAUUGAUGGUAAAUAUUCUCCUUUUUU-UUUUGCAGAAAUUCUUUUUGCUAUUGGCUUUGGCCCUUGUGGGCAUUGCU
.((.(((((....((((((((........((((((..((.((..........))..))..-))))))........))))))))..))))).))((((....))))...... ( -27.69)
>DroSec_CAF1 11618 111 + 1
AUAUAGUCAUUCAAGCAAAGAACUAGGUAGCAGAAUUAAUGGUAAAUAUUCUUCUCUUUUUUUUUGCAGAAAUUCUUUUUGCUAUUGGCUUUAGCCCUUGUGGGCAUUGCU
.............((((((((.((((.((((((((..(((.(((((................)))))....)))..)))))))))))).))).((((....)))).))))) ( -25.09)
>DroSim_CAF1 10663 110 + 1
AUAUAGUCAUUCAAGCAAAGAACUAGGUAGCAGAAUUAAUGGUAAAUAUUCUUCUCUUUU-UUUUGCAGAAAUUCUUUUUGCUAUUGGCUUUAGCCCUUGUGGGCAUUGCU
.............((((((((.((((.((((((((..(((.(((((..............-.)))))....)))..)))))))))))).))).((((....)))).))))) ( -25.16)
>DroEre_CAF1 14986 111 + 1
AUAACGUCAUUUAAGUAAAGCCUUACGUAGCAGAAUUAAUGGCUAAAAUUAUUAUCUUUUUUCUUGCAGAAAUUCUUUUUGCUAUUGGCUUUGGCCCUUGUAGGCAUUGCU
.............(((((.((((.(((((((((((..(((.((.((((.........))))....))....)))..))))))))).(((....)))...)))))).))))) ( -24.50)
>DroYak_CAF1 12738 98 + 1
AUAAAGUCAUUCA-------------GUAGCAGAAUAAAUGGUUAAUAUAUUUUUCUUUCUUUUUUCAGAAAUUCUUUUUGCUGUUGGCUUUGGCCCUUGUAGGCAUUGCU
.((((((((..((-------------((((.(((((...(((..((...............))..)))...)))))..)))))).))))))))(((......)))...... ( -20.26)
>consensus
AUAUAGUCAUUCAAGCAAAGAACUAGGUAGCAGAAUUAAUGGUAAAUAUUCUUCUCUUUUUUUUUGCAGAAAUUCUUUUUGCUAUUGGCUUUGGCCCUUGUGGGCAUUGCU
.....(((...((((..........((((((((((..(((.(((((................)))))....)))..))))))))))(((....)))))))..)))...... (-17.41 = -18.41 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:02 2006