Locus 1532

Sequence ID 3L_DroMel_CAF1
Location 4,429,556 – 4,429,647
Length 91
Max. P 0.541782
window2384

overview

Window 4

Location 4,429,556 – 4,429,647
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 85.71
Mean single sequence MFE -17.77
Consensus MFE -12.74
Energy contribution -13.97
Covariance contribution 1.23
Combinations/Pair 1.08
Mean z-score -1.91
Structure conservation index 0.72
SVM decision value 0.02
SVM RNA-class probability 0.541782
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4429556 91 + 23771897
AAUAACAAUCUCACUCACUGGCAGUUUUUGAAAUAUCUGUUAAUUUGUAUAUAGCAGAUUUUGACUUAAACUGAGGUCAUCCAUAUGGGAU
.......((((((........((((((..(.((.((((((((.........)))))))).))..)..)))))).((....))...)))))) ( -18.60)
>DroSec_CAF1 11436 91 + 1
AAUAACAAUCUCACCCGCUGUCAUUUUUUUAAAUUUCUGUUAAUUUGUGCAUAGCAGAUUUUUACUUAAUCUGAGCUCAUUUGUAUGGGAU
.......((((((..(((((((((....((((.......))))...))).)))))(((((.......)))))..........)..)))))) ( -14.20)
>DroSim_CAF1 10481 91 + 1
AAUAACAAUCUCACACAUUGGCAGAUUUUUCAAUUUCUGUUAAUUUGUACAUAUCAGAUUUUGACUUAAUCUGACCUCAUUCAUAUGGGAU
.......((((((((.(((((((((..........))))))))).))).....(((((((.......)))))))............))))) ( -20.50)
>consensus
AAUAACAAUCUCACACACUGGCAGUUUUUUAAAUUUCUGUUAAUUUGUACAUAGCAGAUUUUGACUUAAUCUGAGCUCAUUCAUAUGGGAU
.......((((((.....((.((((((..((((..(((((((.........)))))))..))))...))))))....))......)))))) (-12.74 = -13.97 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:01 2006