Locus 153

Sequence ID 3L_DroMel_CAF1
Location 483,289 – 483,396
Length 107
Max. P 0.800658
window219

overview

Window 9

Location 483,289 – 483,396
Length 107
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 89.07
Mean single sequence MFE -31.08
Consensus MFE -22.20
Energy contribution -22.84
Covariance contribution 0.64
Combinations/Pair 1.14
Mean z-score -2.28
Structure conservation index 0.71
SVM decision value 0.62
SVM RNA-class probability 0.800658
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 483289 107 - 23771897
CAGAAUUUUCUUCGGUCUGGUCCGAUCGGAAAUU-UUUACGCAAGCCGUAAAUGCGCCAAAAUCUGGAACACAAAUACGUUUUUCUCUGUUUUCGCGUUAGGGGCUUU
.(((((((((.((((......))))..)))))))-)).....(((((.(.((((((..(((((..((((.((......)).))))...))))))))))).).))))). ( -27.30)
>DroSec_CAF1 63988 107 - 1
GAGAAUUUUCUUCGGUCUGGUCCGAUCGGGAGUUCUUCACGCAAGCCGUAAAUGCGCCAAAAUCUGGCACACAAAUAAGUUUUCCUCUGUUUUCGCGUUUG-GGCUUU
(((((((..(.((((......))))..)..))))))).....(((((.(((((((((((.....))))....(((((((.....)).)))))..)))))))-))))). ( -32.20)
>DroSim_CAF1 64727 108 - 1
GAGAAUUUUCUUCGGUCUGGUCCGAUCGGGAAUUCUUCACGCAAGCCGUAAAUGCACCAAAAUCUGGCACACAAAUAAGUUUUUCUCUGUUUUCGCGUUUGGGGCUUU
(((((((..(.((((......))))..)..))))))).....(((((.(((((((.(((.....))).....(((((((.....)).)))))..))))))).))))). ( -30.90)
>DroEre_CAF1 66215 106 - 1
CAGAAUUUUCUUCGCUCUUGUCCGAUCGGAAAUUCUUCACGCAAGCCGUAAAUGCGCCAAAAUCUGGCGCACAAAUAGGUUUUCCCCUGUUUUUGCUUU-GCGGC-UU
.(((((((((.(((........)))..)))))))))......(((((((((((((((((.....))))))).(((((((......)))))))....)))-)))))-)) ( -38.20)
>DroYak_CAF1 67202 108 - 1
CAGAAUUUUCCUCCGUCUUUUCCGAUAGGAAAUUCUUCACGCAAGCCGCAAAUGCGCCAAAAUCUGGCACACGAAUAAGUUUUCCUCUGUUUUUGCGUUAGAGGCUUU
.(((((((.(((..(((......)))))))))))))......(((((.(.(((((((((.....))))....(((......)))..........))))).).))))). ( -26.80)
>consensus
CAGAAUUUUCUUCGGUCUGGUCCGAUCGGAAAUUCUUCACGCAAGCCGUAAAUGCGCCAAAAUCUGGCACACAAAUAAGUUUUCCUCUGUUUUCGCGUUAGGGGCUUU
.(((((((((.((((......))))..)))))))))......(((((.(.(((((((((.....))))....(((((((.....)).)))))..))))).).))))). (-22.20 = -22.84 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:58 2006